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IGKV1D-13 (immunoglobulin kappa variable 1D-13)

Identity

Other aliasIGKV1D13
L18
HGNC (Hugo) IGKV1D-13
LocusID (NCBI) 28902
Atlas_Id 64560
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 88857361 and ends at 89085693 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGKV1D-13   5747
Cards
Entrez_Gene (NCBI)IGKV1D-13  28902  immunoglobulin kappa variable 1D-13
AliasesIGKV1D13; L18
GeneCards (Weizmann)IGKV1D-13
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:88857361-89085693 [Contig_View]  IGKV1D-13 [Vega]
TCGA cBioPortalIGKV1D-13
AceView (NCBI)IGKV1D-13
Genatlas (Paris)IGKV1D-13
WikiGenes28902
SOURCE (Princeton)IGKV1D-13
Genetics Home Reference (NIH)IGKV1D-13
Genomic and cartography
GoldenPath hg38 (UCSC)IGKV1D-13  -     chr2:88857361-89085693 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGKV1D-13  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblIGKV1D-13 - 2p11.2 [CytoView hg19]  IGKV1D-13 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIIGKV1D-13 [Mapview hg19]  IGKV1D-13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DQ892007 DQ895196 U86790
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGKV1D-13
Cluster EST : UnigeneHs.390427 [ NCBI ]
CGAP (NCI)Hs.390427
Gene ExpressionIGKV1D-13 [ NCBI-GEO ]   IGKV1D-13 [ EBI - ARRAY_EXPRESS ]   IGKV1D-13 [ SEEK ]   IGKV1D-13 [ MEM ]
Gene Expression Viewer (FireBrowse)IGKV1D-13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28902
GTEX Portal (Tissue expression)IGKV1D-13
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A0B4J2D9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A0B4J2D9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A0B4J2D9
Splice isoforms : SwissVarA0A0B4J2D9
PhosPhoSitePlusA0A0B4J2D9
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  
Conserved Domain (NCBI)IGKV1D-13
DMDM Disease mutations28902
Blocks (Seattle)IGKV1D-13
SuperfamilyA0A0B4J2D9
Peptide AtlasA0A0B4J2D9
Protein Interaction databases
DIP (DOE-UCLA)A0A0B4J2D9
IntAct (EBI)A0A0B4J2D9
BioGRIDIGKV1D-13
STRING (EMBL)IGKV1D-13
ZODIACIGKV1D-13
Ontologies - Pathways
QuickGOA0A0B4J2D9
Ontology : AmiGOadaptive immune response  immunoglobulin production  antigen binding  extracellular space  plasma membrane  immune response  
Ontology : EGO-EBIadaptive immune response  immunoglobulin production  antigen binding  extracellular space  plasma membrane  immune response  
NDEx NetworkIGKV1D-13
Atlas of Cancer Signalling NetworkIGKV1D-13
Wikipedia pathwaysIGKV1D-13
Orthology - Evolution
OrthoDB28902
Phylogenetic Trees/Animal Genes : TreeFamIGKV1D-13
HOVERGENA0A0B4J2D9
HOGENOMA0A0B4J2D9
Homologs : HomoloGeneIGKV1D-13
Homology/Alignments : Family Browser (UCSC)IGKV1D-13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGKV1D-13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGKV1D-13
dbVarIGKV1D-13
ClinVarIGKV1D-13
1000_GenomesIGKV1D-13 
Exome Variant ServerIGKV1D-13
ExAC (Exome Aggregation Consortium)IGKV1D-13 (select the gene name)
Genetic variants : HAPMAP28902
Genomic Variants (DGV)IGKV1D-13 [DGVbeta]
DECIPHERIGKV1D-13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGKV1D-13 
Mutations
ICGC Data PortalIGKV1D-13 
TCGA Data PortalIGKV1D-13 
Broad Tumor PortalIGKV1D-13
OASIS PortalIGKV1D-13 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGKV1D-13
BioMutasearch IGKV1D-13
DgiDB (Drug Gene Interaction Database)IGKV1D-13
DoCM (Curated mutations)IGKV1D-13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGKV1D-13 (select a term)
intoGenIGKV1D-13
Cancer3DIGKV1D-13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGKV1D-13
Genetic Testing Registry IGKV1D-13
NextProtA0A0B4J2D9 [Medical]
TSGene28902
GENETestsIGKV1D-13
Target ValidationIGKV1D-13
Huge Navigator IGKV1D-13 [HugePedia]
snp3D : Map Gene to Disease28902
BioCentury BCIQIGKV1D-13
ClinGenIGKV1D-13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28902
Chemical/Pharm GKB GenePA35329
Clinical trialIGKV1D-13
Miscellaneous
canSAR (ICR)IGKV1D-13 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGKV1D-13
EVEXIGKV1D-13
GoPubMedIGKV1D-13
iHOPIGKV1D-13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:17 CEST 2017

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