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IGKV1D-8 (immunoglobulin kappa variable 1D-8)

Identity

Other aliasIGKV1D8
L24
L24a
HGNC (Hugo) IGKV1D-8
LocusID (NCBI) 28904
Atlas_Id 64561
Location 2_KI270894v1_alt  [Link to chromosome band 2]
Location_base_pair Starts at 2770 and ends at 3048 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGKV1D-8   5759
Cards
Entrez_Gene (NCBI)IGKV1D-8  28904  immunoglobulin kappa variable 1D-8
AliasesIGKV1D8; L24; L24a
GeneCards (Weizmann)IGKV1D-8
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2_KI270894v1_alt:2770-3048 [Contig_View]  IGKV1D-8 [Vega]
TCGA cBioPortalIGKV1D-8
AceView (NCBI)IGKV1D-8
Genatlas (Paris)IGKV1D-8
WikiGenes28904
SOURCE (Princeton)IGKV1D-8
Genetics Home Reference (NIH)IGKV1D-8
Genomic and cartography
GoldenPath hg38 (UCSC)IGKV1D-8  -     chr2_KI270894v1_alt:2770-3048 +  2_KI270894v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGKV1D-8  -     2_KI270894v1_alt   [Description]    (hg19-Feb_2009)
EnsemblIGKV1D-8 - 2_KI270894v1_alt [CytoView hg19]  IGKV1D-8 - 2_KI270894v1_alt [CytoView hg38]
Mapping of homologs : NCBIIGKV1D-8 [Mapview hg19]  IGKV1D-8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF035035
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGKV1D-8
Cluster EST : UnigeneHs.574701 [ NCBI ]
CGAP (NCI)Hs.574701
Gene ExpressionIGKV1D-8 [ NCBI-GEO ]   IGKV1D-8 [ EBI - ARRAY_EXPRESS ]   IGKV1D-8 [ SEEK ]   IGKV1D-8 [ MEM ]
Gene Expression Viewer (FireBrowse)IGKV1D-8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28904
GTEX Portal (Tissue expression)IGKV1D-8
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A087WSZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A087WSZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A087WSZ0
Splice isoforms : SwissVarA0A087WSZ0
PhosPhoSitePlusA0A087WSZ0
Domaine pattern : Prosite (Expaxy)Ig_LHKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)IGKV1D-8
DMDM Disease mutations28904
Blocks (Seattle)IGKV1D-8
SuperfamilyA0A087WSZ0
Peptide AtlasA0A087WSZ0
IPIIPI00854611   
Protein Interaction databases
DIP (DOE-UCLA)A0A087WSZ0
IntAct (EBI)A0A087WSZ0
BioGRIDIGKV1D-8
STRING (EMBL)IGKV1D-8
ZODIACIGKV1D-8
Ontologies - Pathways
QuickGOA0A087WSZ0
Ontology : AmiGOadaptive immune response  immunoglobulin production  antigen binding  extracellular space  plasma membrane  immune response  
Ontology : EGO-EBIadaptive immune response  immunoglobulin production  antigen binding  extracellular space  plasma membrane  immune response  
NDEx NetworkIGKV1D-8
Atlas of Cancer Signalling NetworkIGKV1D-8
Wikipedia pathwaysIGKV1D-8
Orthology - Evolution
OrthoDB28904
Phylogenetic Trees/Animal Genes : TreeFamIGKV1D-8
HOVERGENA0A087WSZ0
HOGENOMA0A087WSZ0
Homologs : HomoloGeneIGKV1D-8
Homology/Alignments : Family Browser (UCSC)IGKV1D-8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGKV1D-8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGKV1D-8
dbVarIGKV1D-8
ClinVarIGKV1D-8
1000_GenomesIGKV1D-8 
Exome Variant ServerIGKV1D-8
ExAC (Exome Aggregation Consortium)IGKV1D-8 (select the gene name)
Genetic variants : HAPMAP28904
Genomic Variants (DGV)IGKV1D-8 [DGVbeta]
DECIPHERIGKV1D-8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGKV1D-8 
Mutations
ICGC Data PortalIGKV1D-8 
TCGA Data PortalIGKV1D-8 
Broad Tumor PortalIGKV1D-8
OASIS PortalIGKV1D-8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGKV1D-8
BioMutasearch IGKV1D-8
DgiDB (Drug Gene Interaction Database)IGKV1D-8
DoCM (Curated mutations)IGKV1D-8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGKV1D-8 (select a term)
intoGenIGKV1D-8
Cancer3DIGKV1D-8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGKV1D-8
Genetic Testing Registry IGKV1D-8
NextProtA0A087WSZ0 [Medical]
TSGene28904
GENETestsIGKV1D-8
Target ValidationIGKV1D-8
Huge Navigator IGKV1D-8 [HugePedia]
snp3D : Map Gene to Disease28904
BioCentury BCIQIGKV1D-8
ClinGenIGKV1D-8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28904
Chemical/Pharm GKB GenePA35341
Clinical trialIGKV1D-8
Miscellaneous
canSAR (ICR)IGKV1D-8 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGKV1D-8
EVEXIGKV1D-8
GoPubMedIGKV1D-8
iHOPIGKV1D-8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:05 CEST 2017

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