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IGKV3-20 (immunoglobulin kappa variable 3-20)

Identity

Other alias13K18
A27
IGKV320
HGNC (Hugo) IGKV3-20
LocusID (NCBI) 28912
Atlas_Id 64563
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 88860885 and ends at 89142861 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IGKV3-20 (2p11.2) / IGHG1 (14q32.33)IGKV3-20 (2p11.2) / RNA28S5 ()
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGKV3-20   5817
Cards
Entrez_Gene (NCBI)IGKV3-20  28912  immunoglobulin kappa variable 3-20
Aliases13K18; A27; IGKV320
GeneCards (Weizmann)IGKV3-20
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:88860885-89142861 [Contig_View]  IGKV3-20 [Vega]
TCGA cBioPortalIGKV3-20
AceView (NCBI)IGKV3-20
Genatlas (Paris)IGKV3-20
WikiGenes28912
SOURCE (Princeton)IGKV3-20
Genetics Home Reference (NIH)IGKV3-20
Genomic and cartography
GoldenPath hg38 (UCSC)IGKV3-20  -     chr2:88860885-89142861 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGKV3-20  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblIGKV3-20 - 2p11.2 [CytoView hg19]  IGKV3-20 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIIGKV3-20 [Mapview hg19]  IGKV3-20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF035036 AJ006111 AJ006112 AJ006114 AJ006115
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGKV3-20
Cluster EST : UnigeneHs.719895 [ NCBI ]
CGAP (NCI)Hs.719895
Gene ExpressionIGKV3-20 [ NCBI-GEO ]   IGKV3-20 [ EBI - ARRAY_EXPRESS ]   IGKV3-20 [ SEEK ]   IGKV3-20 [ MEM ]
Gene Expression Viewer (FireBrowse)IGKV3-20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28912
GTEX Portal (Tissue expression)IGKV3-20
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01619   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01619  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01619
Splice isoforms : SwissVarP01619
PhosPhoSitePlusP01619
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  
Conserved Domain (NCBI)IGKV3-20
DMDM Disease mutations28912
Blocks (Seattle)IGKV3-20
PDB (SRS)1DH5    4LRN    4M62    4M8Q    4OB5    4ODX   
PDB (PDBSum)1DH5    4LRN    4M62    4M8Q    4OB5    4ODX   
PDB (IMB)1DH5    4LRN    4M62    4M8Q    4OB5    4ODX   
PDB (RSDB)1DH5    4LRN    4M62    4M8Q    4OB5    4ODX   
Structural Biology KnowledgeBase1DH5    4LRN    4M62    4M8Q    4OB5    4ODX   
SCOP (Structural Classification of Proteins)1DH5    4LRN    4M62    4M8Q    4OB5    4ODX   
CATH (Classification of proteins structures)1DH5    4LRN    4M62    4M8Q    4OB5    4ODX   
SuperfamilyP01619
Peptide AtlasP01619
IPIIPI00030205   IPI00384576   IPI01025882   
Protein Interaction databases
DIP (DOE-UCLA)P01619
IntAct (EBI)P01619
BioGRIDIGKV3-20
STRING (EMBL)IGKV3-20
ZODIACIGKV3-20
Ontologies - Pathways
QuickGOP01619
Ontology : AmiGOglomerular filtration  antigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  extracellular space  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  antibacterial humoral response  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  extracellular exosome  monomeric IgA immunoglobulin complex  secretory IgA immunoglobulin complex  pentameric IgM immunoglobulin complex  blood microparticle  
Ontology : EGO-EBIglomerular filtration  antigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  extracellular space  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  antibacterial humoral response  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  extracellular exosome  monomeric IgA immunoglobulin complex  secretory IgA immunoglobulin complex  pentameric IgM immunoglobulin complex  blood microparticle  
NDEx NetworkIGKV3-20
Atlas of Cancer Signalling NetworkIGKV3-20
Wikipedia pathwaysIGKV3-20
Orthology - Evolution
OrthoDB28912
Phylogenetic Trees/Animal Genes : TreeFamIGKV3-20
HOVERGENP01619
HOGENOMP01619
Homologs : HomoloGeneIGKV3-20
Homology/Alignments : Family Browser (UCSC)IGKV3-20
Gene fusions - Rearrangements
Fusion: Tumor Portal IGKV3-20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGKV3-20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGKV3-20
dbVarIGKV3-20
ClinVarIGKV3-20
1000_GenomesIGKV3-20 
Exome Variant ServerIGKV3-20
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP28912
Genomic Variants (DGV)IGKV3-20 [DGVbeta]
DECIPHERIGKV3-20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGKV3-20 
Mutations
ICGC Data PortalIGKV3-20 
TCGA Data PortalIGKV3-20 
Broad Tumor PortalIGKV3-20
OASIS PortalIGKV3-20 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGKV3-20
BioMutasearch IGKV3-20
DgiDB (Drug Gene Interaction Database)IGKV3-20
DoCM (Curated mutations)IGKV3-20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGKV3-20 (select a term)
intoGenIGKV3-20
Cancer3DIGKV3-20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGKV3-20
Genetic Testing Registry IGKV3-20
NextProtP01619 [Medical]
TSGene28912
GENETestsIGKV3-20
Target ValidationIGKV3-20
Huge Navigator IGKV3-20 [HugePedia]
snp3D : Map Gene to Disease28912
BioCentury BCIQIGKV3-20
ClinGenIGKV3-20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28912
Chemical/Pharm GKB GenePA35393
Clinical trialIGKV3-20
Miscellaneous
canSAR (ICR)IGKV3-20 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGKV3-20
EVEXIGKV3-20
GoPubMedIGKV3-20
iHOPIGKV3-20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:51:24 CET 2017

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