Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IGKV3-20 (immunoglobulin kappa variable 3-20)

Identity

Other alias13K18
A27
IGKV320
HGNC (Hugo) IGKV3-20
LocusID (NCBI) 28912
Atlas_Id 64563
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 89160397 and ends at 89442344 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IGKV3-20 (2p11.2) / IGHG1 (14q32.33)IGKV3-20 (2p11.2) / RNA28S5 ()
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGKV3-20   5817
Cards
Entrez_Gene (NCBI)IGKV3-20  28912  immunoglobulin kappa variable 3-20
Aliases13K18; A27; IGKV320
GeneCards (Weizmann)IGKV3-20
Ensembl hg19 (Hinxton) [Gene_View]  chr2:89160397-89442344 [Contig_View]  IGKV3-20 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:89160397-89442344 [Contig_View]  IGKV3-20 [Vega]
TCGA cBioPortalIGKV3-20
AceView (NCBI)IGKV3-20
Genatlas (Paris)IGKV3-20
WikiGenes28912
SOURCE (Princeton)IGKV3-20
Genetics Home Reference (NIH)IGKV3-20
Genomic and cartography
GoldenPath hg19 (UCSC)IGKV3-20  -     chr2:89160397-89442344 -  2p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IGKV3-20  -     2p11.2   [Description]    (hg38-Dec_2013)
EnsemblIGKV3-20 - 2p11.2 [CytoView hg19]  IGKV3-20 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIIGKV3-20 [Mapview hg19]  IGKV3-20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF035036 AJ006111 AJ006112 AJ006114 AJ006115
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_000834 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)IGKV3-20
Cluster EST : UnigeneHs.719895 [ NCBI ]
CGAP (NCI)Hs.719895
Gene ExpressionIGKV3-20 [ NCBI-GEO ]   IGKV3-20 [ EBI - ARRAY_EXPRESS ]   IGKV3-20 [ SEEK ]   IGKV3-20 [ MEM ]
Gene Expression Viewer (FireBrowse)IGKV3-20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28912
GTEX Portal (Tissue expression)IGKV3-20
Protein : pattern, domain, 3D structure
UniProt/SwissProtP18135   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP18135  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP18135
Splice isoforms : SwissVarP18135
PhosPhoSitePlusP18135
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)IGKV3-20
DMDM Disease mutations28912
Blocks (Seattle)IGKV3-20
PDB (SRS)1DH5   
PDB (PDBSum)1DH5   
PDB (IMB)1DH5   
PDB (RSDB)1DH5   
Structural Biology KnowledgeBase1DH5   
SCOP (Structural Classification of Proteins)1DH5   
CATH (Classification of proteins structures)1DH5   
SuperfamilyP18135
Peptide AtlasP18135
IPIIPI00030205   IPI00384576   IPI01025882   
Protein Interaction databases
DIP (DOE-UCLA)P18135
IntAct (EBI)P18135
BioGRIDIGKV3-20
STRING (EMBL)IGKV3-20
ZODIACIGKV3-20
Ontologies - Pathways
QuickGOP18135
Ontology : AmiGOglomerular filtration  antigen binding  extracellular region  extracellular region  extracellular space  plasma membrane  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  antibacterial humoral response  immunoglobulin receptor binding  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  innate immune response  regulation of immune response  extracellular exosome  monomeric IgA immunoglobulin complex  secretory IgA immunoglobulin complex  pentameric IgM immunoglobulin complex  blood microparticle  
Ontology : EGO-EBIglomerular filtration  antigen binding  extracellular region  extracellular region  extracellular space  plasma membrane  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  antibacterial humoral response  immunoglobulin receptor binding  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  innate immune response  regulation of immune response  extracellular exosome  monomeric IgA immunoglobulin complex  secretory IgA immunoglobulin complex  pentameric IgM immunoglobulin complex  blood microparticle  
NDEx NetworkIGKV3-20
Atlas of Cancer Signalling NetworkIGKV3-20
Wikipedia pathwaysIGKV3-20
Orthology - Evolution
OrthoDB28912
Phylogenetic Trees/Animal Genes : TreeFamIGKV3-20
HOVERGENP18135
HOGENOMP18135
Homologs : HomoloGeneIGKV3-20
Homology/Alignments : Family Browser (UCSC)IGKV3-20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGKV3-20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGKV3-20
dbVarIGKV3-20
ClinVarIGKV3-20
1000_GenomesIGKV3-20 
Exome Variant ServerIGKV3-20
ExAC (Exome Aggregation Consortium)IGKV3-20 (select the gene name)
Genetic variants : HAPMAP28912
Genomic Variants (DGV)IGKV3-20 [DGVbeta]
DECIPHER (Syndromes)2:89160397-89442344  
CONAN: Copy Number AnalysisIGKV3-20 
Mutations
ICGC Data PortalIGKV3-20 
TCGA Data PortalIGKV3-20 
Broad Tumor PortalIGKV3-20
OASIS PortalIGKV3-20 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGKV3-20
BioMutasearch IGKV3-20
DgiDB (Drug Gene Interaction Database)IGKV3-20
DoCM (Curated mutations)IGKV3-20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGKV3-20 (select a term)
intoGenIGKV3-20
Cancer3DIGKV3-20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGKV3-20
Genetic Testing Registry IGKV3-20
NextProtP18135 [Medical]
TSGene28912
GENETestsIGKV3-20
Huge Navigator IGKV3-20 [HugePedia]
snp3D : Map Gene to Disease28912
BioCentury BCIQIGKV3-20
ClinGenIGKV3-20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28912
Chemical/Pharm GKB GenePA35393
Clinical trialIGKV3-20
Miscellaneous
canSAR (ICR)IGKV3-20 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGKV3-20
EVEXIGKV3-20
GoPubMedIGKV3-20
iHOPIGKV3-20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:40 CET 2017

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