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IGKV3D-15 (immunoglobulin kappa variable 3D-15 (gene/pseudogene))

Identity

Alias_namesimmunoglobulin kappa variable 3D-15
Other aliasIGKV3D15
L16
L16a
L16b
L16c
HGNC (Hugo) IGKV3D-15
LocusID (NCBI) 28875
Atlas_Id 64564
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 88861220 and ends at 89085461 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGKV3D-15   5824
Cards
Entrez_Gene (NCBI)IGKV3D-15  28875  immunoglobulin kappa variable 3D-15 (gene/pseudogene)
AliasesIGKV3D15; L16; L16a; L16b; 
L16c
GeneCards (Weizmann)IGKV3D-15
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:88861220-89085461 [Contig_View]  IGKV3D-15 [Vega]
TCGA cBioPortalIGKV3D-15
AceView (NCBI)IGKV3D-15
Genatlas (Paris)IGKV3D-15
WikiGenes28875
SOURCE (Princeton)IGKV3D-15
Genetics Home Reference (NIH)IGKV3D-15
Genomic and cartography
GoldenPath hg38 (UCSC)IGKV3D-15  -     chr2:88861220-89085461 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGKV3D-15  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblIGKV3D-15 - 2p11.2 [CytoView hg19]  IGKV3D-15 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIIGKV3D-15 [Mapview hg19]  IGKV3D-15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF035031
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGKV3D-15
Cluster EST : UnigeneHs.449609 [ NCBI ]
CGAP (NCI)Hs.449609
Gene ExpressionIGKV3D-15 [ NCBI-GEO ]   IGKV3D-15 [ EBI - ARRAY_EXPRESS ]   IGKV3D-15 [ SEEK ]   IGKV3D-15 [ MEM ]
Gene Expression Viewer (FireBrowse)IGKV3D-15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28875
GTEX Portal (Tissue expression)IGKV3D-15
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A087WSY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A087WSY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A087WSY6
Splice isoforms : SwissVarA0A087WSY6
PhosPhoSitePlusA0A087WSY6
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  
Conserved Domain (NCBI)IGKV3D-15
DMDM Disease mutations28875
Blocks (Seattle)IGKV3D-15
SuperfamilyA0A087WSY6
Peptide AtlasA0A087WSY6
IPIIPI01026045   
Protein Interaction databases
DIP (DOE-UCLA)A0A087WSY6
IntAct (EBI)A0A087WSY6
BioGRIDIGKV3D-15
STRING (EMBL)IGKV3D-15
ZODIACIGKV3D-15
Ontologies - Pathways
QuickGOA0A087WSY6
Ontology : AmiGOadaptive immune response  immunoglobulin production  antigen binding  extracellular space  plasma membrane  immune response  
Ontology : EGO-EBIadaptive immune response  immunoglobulin production  antigen binding  extracellular space  plasma membrane  immune response  
NDEx NetworkIGKV3D-15
Atlas of Cancer Signalling NetworkIGKV3D-15
Wikipedia pathwaysIGKV3D-15
Orthology - Evolution
OrthoDB28875
Phylogenetic Trees/Animal Genes : TreeFamIGKV3D-15
HOVERGENA0A087WSY6
HOGENOMA0A087WSY6
Homologs : HomoloGeneIGKV3D-15
Homology/Alignments : Family Browser (UCSC)IGKV3D-15
Gene fusions - Rearrangements
Tumor Fusion PortalIGKV3D-15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGKV3D-15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGKV3D-15
dbVarIGKV3D-15
ClinVarIGKV3D-15
1000_GenomesIGKV3D-15 
Exome Variant ServerIGKV3D-15
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP28875
Genomic Variants (DGV)IGKV3D-15 [DGVbeta]
DECIPHERIGKV3D-15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGKV3D-15 
Mutations
ICGC Data PortalIGKV3D-15 
TCGA Data PortalIGKV3D-15 
Broad Tumor PortalIGKV3D-15
OASIS PortalIGKV3D-15 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGKV3D-15
BioMutasearch IGKV3D-15
DgiDB (Drug Gene Interaction Database)IGKV3D-15
DoCM (Curated mutations)IGKV3D-15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGKV3D-15 (select a term)
intoGenIGKV3D-15
Cancer3DIGKV3D-15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETIGKV3D-15
MedgenIGKV3D-15
Genetic Testing Registry IGKV3D-15
NextProtA0A087WSY6 [Medical]
TSGene28875
GENETestsIGKV3D-15
Target ValidationIGKV3D-15
Huge Navigator IGKV3D-15 [HugePedia]
snp3D : Map Gene to Disease28875
BioCentury BCIQIGKV3D-15
ClinGenIGKV3D-15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28875
Chemical/Pharm GKB GenePA35399
Clinical trialIGKV3D-15
Miscellaneous
canSAR (ICR)IGKV3D-15 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGKV3D-15
EVEXIGKV3D-15
GoPubMedIGKV3D-15
iHOPIGKV3D-15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:04:45 CET 2017

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