Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IGLON5 (IgLON family member 5)

Identity

Alias_symbol (synonym)LOC402665
Other alias-
HGNC (Hugo) IGLON5
LocusID (NCBI) 402665
Atlas_Id 64568
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51815102 and ends at 51834102 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IGLON5 (19q13.41) / ZNF503 (10q22.2)ZNF503 (10q22.2) / IGLON5 (19q13.41)ZNF584 (19q13.43) / IGLON5 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGLON5   34550
Cards
Entrez_Gene (NCBI)IGLON5  402665  IgLON family member 5
Aliases
GeneCards (Weizmann)IGLON5
Ensembl hg19 (Hinxton)ENSG00000142549 [Gene_View]  chr19:51815102-51834102 [Contig_View]  IGLON5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000142549 [Gene_View]  chr19:51815102-51834102 [Contig_View]  IGLON5 [Vega]
ICGC DataPortalENSG00000142549
TCGA cBioPortalIGLON5
AceView (NCBI)IGLON5
Genatlas (Paris)IGLON5
WikiGenes402665
SOURCE (Princeton)IGLON5
Genetics Home Reference (NIH)IGLON5
Genomic and cartography
GoldenPath hg19 (UCSC)IGLON5  -     chr19:51815102-51834102 +  19q13.41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IGLON5  -     19q13.41   [Description]    (hg38-Dec_2013)
EnsemblIGLON5 - 19q13.41 [CytoView hg19]  IGLON5 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIIGLON5 [Mapview hg19]  IGLON5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001101372
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)IGLON5
Cluster EST : UnigeneHs.546636 [ NCBI ]
CGAP (NCI)Hs.546636
Alternative Splicing GalleryENSG00000142549
Gene ExpressionIGLON5 [ NCBI-GEO ]   IGLON5 [ EBI - ARRAY_EXPRESS ]   IGLON5 [ SEEK ]   IGLON5 [ MEM ]
Gene Expression Viewer (FireBrowse)IGLON5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)402665
GTEX Portal (Tissue expression)IGLON5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGN9
Splice isoforms : SwissVarA6NGN9
PhosPhoSitePlusA6NGN9
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)IGLON5
DMDM Disease mutations402665
Blocks (Seattle)IGLON5
SuperfamilyA6NGN9
Human Protein AtlasENSG00000142549
Peptide AtlasA6NGN9
IPIIPI00455667   
Protein Interaction databases
DIP (DOE-UCLA)A6NGN9
IntAct (EBI)A6NGN9
FunCoupENSG00000142549
BioGRIDIGLON5
STRING (EMBL)IGLON5
ZODIACIGLON5
Ontologies - Pathways
QuickGOA6NGN9
Ontology : AmiGOextracellular region  plasma membrane  cell-cell junction  cell surface  single organismal cell-cell adhesion  neuron projection  neuronal cell body  regulation of neurogenesis  
Ontology : EGO-EBIextracellular region  plasma membrane  cell-cell junction  cell surface  single organismal cell-cell adhesion  neuron projection  neuronal cell body  regulation of neurogenesis  
NDEx NetworkIGLON5
Atlas of Cancer Signalling NetworkIGLON5
Wikipedia pathwaysIGLON5
Orthology - Evolution
OrthoDB402665
GeneTree (enSembl)ENSG00000142549
Phylogenetic Trees/Animal Genes : TreeFamIGLON5
HOVERGENA6NGN9
HOGENOMA6NGN9
Homologs : HomoloGeneIGLON5
Homology/Alignments : Family Browser (UCSC)IGLON5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGLON5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGLON5
dbVarIGLON5
ClinVarIGLON5
1000_GenomesIGLON5 
Exome Variant ServerIGLON5
ExAC (Exome Aggregation Consortium)IGLON5 (select the gene name)
Genetic variants : HAPMAP402665
Genomic Variants (DGV)IGLON5 [DGVbeta]
DECIPHER (Syndromes)19:51815102-51834102  ENSG00000142549
CONAN: Copy Number AnalysisIGLON5 
Mutations
ICGC Data PortalIGLON5 
TCGA Data PortalIGLON5 
Broad Tumor PortalIGLON5
OASIS PortalIGLON5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGLON5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGLON5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGLON5
DgiDB (Drug Gene Interaction Database)IGLON5
DoCM (Curated mutations)IGLON5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGLON5 (select a term)
intoGenIGLON5
Cancer3DIGLON5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGLON5
Genetic Testing Registry IGLON5
NextProtA6NGN9 [Medical]
TSGene402665
GENETestsIGLON5
Huge Navigator IGLON5 [HugePedia]
snp3D : Map Gene to Disease402665
BioCentury BCIQIGLON5
ClinGenIGLON5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD402665
Chemical/Pharm GKB GenePA164720915
Clinical trialIGLON5
Miscellaneous
canSAR (ICR)IGLON5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGLON5
EVEXIGLON5
GoPubMedIGLON5
iHOPIGLON5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:08:42 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.