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IGLV3-21 (immunoglobulin lambda variable 3-21)

Identity

Other aliasIGLV321
V2-14
HGNC (Hugo) IGLV3-21
LocusID (NCBI) 28796
Atlas_Id 64571
Location 22q11.22  [Link to chromosome band 22q11]
Location_base_pair Starts at 22712910 and ends at 22893817 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IGLV3-21 (22q11.22) / IGLL5 (22q11.22)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGLV3-21   5905
Cards
Entrez_Gene (NCBI)IGLV3-21  28796  immunoglobulin lambda variable 3-21
AliasesIGLV321; V2-14
GeneCards (Weizmann)IGLV3-21
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:22712910-22893817 [Contig_View]  IGLV3-21 [Vega]
TCGA cBioPortalIGLV3-21
AceView (NCBI)IGLV3-21
Genatlas (Paris)IGLV3-21
WikiGenes28796
SOURCE (Princeton)IGLV3-21
Genetics Home Reference (NIH)IGLV3-21
Genomic and cartography
GoldenPath hg38 (UCSC)IGLV3-21  -     chr22:22712910-22893817 +  22q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGLV3-21  -     22q11.22   [Description]    (hg19-Feb_2009)
EnsemblIGLV3-21 - 22q11.22 [CytoView hg19]  IGLV3-21 - 22q11.22 [CytoView hg38]
Mapping of homologs : NCBIIGLV3-21 [Mapview hg19]  IGLV3-21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AM181375 BC070352
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGLV3-21
Cluster EST : UnigeneHs.625768 [ NCBI ]
CGAP (NCI)Hs.625768
Gene ExpressionIGLV3-21 [ NCBI-GEO ]   IGLV3-21 [ EBI - ARRAY_EXPRESS ]   IGLV3-21 [ SEEK ]   IGLV3-21 [ MEM ]
Gene Expression Viewer (FireBrowse)IGLV3-21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28796
GTEX Portal (Tissue expression)IGLV3-21
Protein : pattern, domain, 3D structure
UniProt/SwissProtP80748   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP80748  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP80748
Splice isoforms : SwissVarP80748
PhosPhoSitePlusP80748
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  
Conserved Domain (NCBI)IGLV3-21
DMDM Disease mutations28796
Blocks (Seattle)IGLV3-21
PDB (SRS)2LOI   
PDB (PDBSum)2LOI   
PDB (IMB)2LOI   
PDB (RSDB)2LOI   
Structural Biology KnowledgeBase2LOI   
SCOP (Structural Classification of Proteins)2LOI   
CATH (Classification of proteins structures)2LOI   
SuperfamilyP80748
Peptide AtlasP80748
IPIIPI00815938   
Protein Interaction databases
DIP (DOE-UCLA)P80748
IntAct (EBI)P80748
BioGRIDIGLV3-21
STRING (EMBL)IGLV3-21
ZODIACIGLV3-21
Ontologies - Pathways
QuickGOP80748
Ontology : AmiGOantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  extracellular exosome  blood microparticle  
Ontology : EGO-EBIantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  extracellular exosome  blood microparticle  
NDEx NetworkIGLV3-21
Atlas of Cancer Signalling NetworkIGLV3-21
Wikipedia pathwaysIGLV3-21
Orthology - Evolution
OrthoDB28796
Phylogenetic Trees/Animal Genes : TreeFamIGLV3-21
HOVERGENP80748
HOGENOMP80748
Homologs : HomoloGeneIGLV3-21
Homology/Alignments : Family Browser (UCSC)IGLV3-21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGLV3-21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGLV3-21
dbVarIGLV3-21
ClinVarIGLV3-21
1000_GenomesIGLV3-21 
Exome Variant ServerIGLV3-21
ExAC (Exome Aggregation Consortium)IGLV3-21 (select the gene name)
Genetic variants : HAPMAP28796
Genomic Variants (DGV)IGLV3-21 [DGVbeta]
DECIPHERIGLV3-21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGLV3-21 
Mutations
ICGC Data PortalIGLV3-21 
TCGA Data PortalIGLV3-21 
Broad Tumor PortalIGLV3-21
OASIS PortalIGLV3-21 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGLV3-21
BioMutasearch IGLV3-21
DgiDB (Drug Gene Interaction Database)IGLV3-21
DoCM (Curated mutations)IGLV3-21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGLV3-21 (select a term)
intoGenIGLV3-21
Cancer3DIGLV3-21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGLV3-21
Genetic Testing Registry IGLV3-21
NextProtP80748 [Medical]
TSGene28796
GENETestsIGLV3-21
Target ValidationIGLV3-21
Huge Navigator IGLV3-21 [HugePedia]
snp3D : Map Gene to Disease28796
BioCentury BCIQIGLV3-21
ClinGenIGLV3-21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28796
Chemical/Pharm GKB GenePA35448
Clinical trialIGLV3-21
Miscellaneous
canSAR (ICR)IGLV3-21 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGLV3-21
EVEXIGLV3-21
GoPubMedIGLV3-21
iHOPIGLV3-21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:07 CEST 2017

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