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IGLV3-25 (immunoglobulin lambda variable 3-25)

Identity

Other aliasIGLV325
V2-17
HGNC (Hugo) IGLV3-25
LocusID (NCBI) 28793
Atlas_Id 64572
Location 22q11.22  [Link to chromosome band 22q11]
Location_base_pair Starts at 22686732 and ends at 22906799 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGLV3-25   5908
Cards
Entrez_Gene (NCBI)IGLV3-25  28793  immunoglobulin lambda variable 3-25
AliasesIGLV325; V2-17
GeneCards (Weizmann)IGLV3-25
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:22686732-22906799 [Contig_View]  IGLV3-25 [Vega]
TCGA cBioPortalIGLV3-25
AceView (NCBI)IGLV3-25
Genatlas (Paris)IGLV3-25
WikiGenes28793
SOURCE (Princeton)IGLV3-25
Genetics Home Reference (NIH)IGLV3-25
Genomic and cartography
GoldenPath hg38 (UCSC)IGLV3-25  -     chr22:22686732-22906799 +  22q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGLV3-25  -     22q11.22   [Description]    (hg19-Feb_2009)
EnsemblIGLV3-25 - 22q11.22 [CytoView hg19]  IGLV3-25 - 22q11.22 [CytoView hg38]
Mapping of homologs : NCBIIGLV3-25 [Mapview hg19]  IGLV3-25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC022823 BC089418
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGLV3-25
Cluster EST : UnigeneHs.449585 [ NCBI ]
CGAP (NCI)Hs.449585
Gene ExpressionIGLV3-25 [ NCBI-GEO ]   IGLV3-25 [ EBI - ARRAY_EXPRESS ]   IGLV3-25 [ SEEK ]   IGLV3-25 [ MEM ]
Gene Expression Viewer (FireBrowse)IGLV3-25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28793
GTEX Portal (Tissue expression)IGLV3-25
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01717   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01717  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01717
Splice isoforms : SwissVarP01717
PhosPhoSitePlusP01717
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  
Conserved Domain (NCBI)IGLV3-25
DMDM Disease mutations28793
Blocks (Seattle)IGLV3-25
SuperfamilyP01717
Peptide AtlasP01717
IPIIPI00550162   
Protein Interaction databases
DIP (DOE-UCLA)P01717
IntAct (EBI)P01717
BioGRIDIGLV3-25
STRING (EMBL)IGLV3-25
ZODIACIGLV3-25
Ontologies - Pathways
QuickGOP01717
Ontology : AmiGOantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  extracellular exosome  blood microparticle  
Ontology : EGO-EBIantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  extracellular exosome  blood microparticle  
NDEx NetworkIGLV3-25
Atlas of Cancer Signalling NetworkIGLV3-25
Wikipedia pathwaysIGLV3-25
Orthology - Evolution
OrthoDB28793
Phylogenetic Trees/Animal Genes : TreeFamIGLV3-25
HOVERGENP01717
HOGENOMP01717
Homologs : HomoloGeneIGLV3-25
Homology/Alignments : Family Browser (UCSC)IGLV3-25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGLV3-25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGLV3-25
dbVarIGLV3-25
ClinVarIGLV3-25
1000_GenomesIGLV3-25 
Exome Variant ServerIGLV3-25
ExAC (Exome Aggregation Consortium)IGLV3-25 (select the gene name)
Genetic variants : HAPMAP28793
Genomic Variants (DGV)IGLV3-25 [DGVbeta]
DECIPHERIGLV3-25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGLV3-25 
Mutations
ICGC Data PortalIGLV3-25 
TCGA Data PortalIGLV3-25 
Broad Tumor PortalIGLV3-25
OASIS PortalIGLV3-25 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGLV3-25
BioMutasearch IGLV3-25
DgiDB (Drug Gene Interaction Database)IGLV3-25
DoCM (Curated mutations)IGLV3-25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGLV3-25 (select a term)
intoGenIGLV3-25
Cancer3DIGLV3-25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGLV3-25
Genetic Testing Registry IGLV3-25
NextProtP01717 [Medical]
TSGene28793
GENETestsIGLV3-25
Target ValidationIGLV3-25
Huge Navigator IGLV3-25 [HugePedia]
snp3D : Map Gene to Disease28793
BioCentury BCIQIGLV3-25
ClinGenIGLV3-25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28793
Chemical/Pharm GKB GenePA35451
Clinical trialIGLV3-25
Miscellaneous
canSAR (ICR)IGLV3-25 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGLV3-25
EVEXIGLV3-25
GoPubMedIGLV3-25
iHOPIGLV3-25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:07 CEST 2017

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