Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IGLV4-3 (immunoglobulin lambda variable 4-3)

Identity

Other aliasIGLV43
V5-1
HGNC (Hugo) IGLV4-3
LocusID (NCBI) 28786
Atlas_Id 64573
Location 22q11.22  [Link to chromosome band 22q11]
Location_base_pair Starts at 22871507 and ends at 22901436 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGLV4-3   5919
Cards
Entrez_Gene (NCBI)IGLV4-3  28786  immunoglobulin lambda variable 4-3
AliasesIGLV43; V5-1
GeneCards (Weizmann)IGLV4-3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:22871507-22901436 [Contig_View]  IGLV4-3 [Vega]
TCGA cBioPortalIGLV4-3
AceView (NCBI)IGLV4-3
Genatlas (Paris)IGLV4-3
WikiGenes28786
SOURCE (Princeton)IGLV4-3
Genetics Home Reference (NIH)IGLV4-3
Genomic and cartography
GoldenPath hg38 (UCSC)IGLV4-3  -     chr22:22871507-22901436 +  22q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGLV4-3  -     22q11.22   [Description]    (hg19-Feb_2009)
EnsemblIGLV4-3 - 22q11.22 [CytoView hg19]  IGLV4-3 - 22q11.22 [CytoView hg38]
Mapping of homologs : NCBIIGLV4-3 [Mapview hg19]  IGLV4-3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC020236
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGLV4-3
Cluster EST : UnigeneHs.449585 [ NCBI ]
CGAP (NCI)Hs.449585
Gene ExpressionIGLV4-3 [ NCBI-GEO ]   IGLV4-3 [ EBI - ARRAY_EXPRESS ]   IGLV4-3 [ SEEK ]   IGLV4-3 [ MEM ]
Gene Expression Viewer (FireBrowse)IGLV4-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28786
GTEX Portal (Tissue expression)IGLV4-3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A075B6K6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A075B6K6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A075B6K6
Splice isoforms : SwissVarA0A075B6K6
PhosPhoSitePlusA0A075B6K6
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  
Conserved Domain (NCBI)IGLV4-3
DMDM Disease mutations28786
Blocks (Seattle)IGLV4-3
SuperfamilyA0A075B6K6
Peptide AtlasA0A075B6K6
IPIIPI00382938   
Protein Interaction databases
DIP (DOE-UCLA)A0A075B6K6
IntAct (EBI)A0A075B6K6
BioGRIDIGLV4-3
STRING (EMBL)IGLV4-3
ZODIACIGLV4-3
Ontologies - Pathways
QuickGOA0A075B6K6
Ontology : AmiGOadaptive immune response  immunoglobulin production  antigen binding  extracellular space  plasma membrane  immune response  
Ontology : EGO-EBIadaptive immune response  immunoglobulin production  antigen binding  extracellular space  plasma membrane  immune response  
NDEx NetworkIGLV4-3
Atlas of Cancer Signalling NetworkIGLV4-3
Wikipedia pathwaysIGLV4-3
Orthology - Evolution
OrthoDB28786
Phylogenetic Trees/Animal Genes : TreeFamIGLV4-3
HOVERGENA0A075B6K6
HOGENOMA0A075B6K6
Homologs : HomoloGeneIGLV4-3
Homology/Alignments : Family Browser (UCSC)IGLV4-3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGLV4-3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGLV4-3
dbVarIGLV4-3
ClinVarIGLV4-3
1000_GenomesIGLV4-3 
Exome Variant ServerIGLV4-3
ExAC (Exome Aggregation Consortium)IGLV4-3 (select the gene name)
Genetic variants : HAPMAP28786
Genomic Variants (DGV)IGLV4-3 [DGVbeta]
DECIPHERIGLV4-3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGLV4-3 
Mutations
ICGC Data PortalIGLV4-3 
TCGA Data PortalIGLV4-3 
Broad Tumor PortalIGLV4-3
OASIS PortalIGLV4-3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGLV4-3
BioMutasearch IGLV4-3
DgiDB (Drug Gene Interaction Database)IGLV4-3
DoCM (Curated mutations)IGLV4-3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGLV4-3 (select a term)
intoGenIGLV4-3
Cancer3DIGLV4-3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGLV4-3
Genetic Testing Registry IGLV4-3
NextProtA0A075B6K6 [Medical]
TSGene28786
GENETestsIGLV4-3
Target ValidationIGLV4-3
Huge Navigator IGLV4-3 [HugePedia]
snp3D : Map Gene to Disease28786
BioCentury BCIQIGLV4-3
ClinGenIGLV4-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28786
Chemical/Pharm GKB GenePA35462
Clinical trialIGLV4-3
Miscellaneous
canSAR (ICR)IGLV4-3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGLV4-3
EVEXIGLV4-3
GoPubMedIGLV4-3
iHOPIGLV4-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:53:21 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.