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IGLV6-57 (immunoglobulin lambda variable 6-57)

Identity

Other aliasIGLV657
V1-22
HGNC (Hugo) IGLV6-57
LocusID (NCBI) 28778
Atlas_Id 64574
Location 22q11.22  [Link to chromosome band 22q11]
Location_base_pair Starts at 22195981 and ends at 22196274 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IGLV6-57 (22q11.22) / IGLL5 (22q11.22)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)IGLV6-57   5927
Cards
Entrez_Gene (NCBI)IGLV6-57  28778  immunoglobulin lambda variable 6-57
AliasesIGLV657; V1-22
GeneCards (Weizmann)IGLV6-57
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:22195981-22196274 [Contig_View]  IGLV6-57 [Vega]
TCGA cBioPortalIGLV6-57
AceView (NCBI)IGLV6-57
Genatlas (Paris)IGLV6-57
WikiGenes28778
SOURCE (Princeton)IGLV6-57
Genetics Home Reference (NIH)IGLV6-57
Genomic and cartography
GoldenPath hg38 (UCSC)IGLV6-57  -     chr22:22195981-22196274 +  22q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGLV6-57  -     22q11.22   [Description]    (hg19-Feb_2009)
EnsemblIGLV6-57 - 22q11.22 [CytoView hg19]  IGLV6-57 - 22q11.22 [CytoView hg38]
Mapping of homologs : NCBIIGLV6-57 [Mapview hg19]  IGLV6-57 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF267874 AF267875 BC023973
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGLV6-57
Cluster EST : UnigeneHs.535668 [ NCBI ]
CGAP (NCI)Hs.535668
Gene ExpressionIGLV6-57 [ NCBI-GEO ]   IGLV6-57 [ EBI - ARRAY_EXPRESS ]   IGLV6-57 [ SEEK ]   IGLV6-57 [ MEM ]
Gene Expression Viewer (FireBrowse)IGLV6-57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28778
GTEX Portal (Tissue expression)IGLV6-57
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01721   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01721  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01721
Splice isoforms : SwissVarP01721
PhosPhoSitePlusP01721
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  
Conserved Domain (NCBI)IGLV6-57
DMDM Disease mutations28778
Blocks (Seattle)IGLV6-57
PDB (SRS)1CD0    1PEW    2CD0   
PDB (PDBSum)1CD0    1PEW    2CD0   
PDB (IMB)1CD0    1PEW    2CD0   
PDB (RSDB)1CD0    1PEW    2CD0   
Structural Biology KnowledgeBase1CD0    1PEW    2CD0   
SCOP (Structural Classification of Proteins)1CD0    1PEW    2CD0   
CATH (Classification of proteins structures)1CD0    1PEW    2CD0   
SuperfamilyP01721
Peptide AtlasP01721
IPIIPI01022820   IPI00939844   
Protein Interaction databases
DIP (DOE-UCLA)P01721
IntAct (EBI)P01721
BioGRIDIGLV6-57
STRING (EMBL)IGLV6-57
ZODIACIGLV6-57
Ontologies - Pathways
QuickGOP01721
Ontology : AmiGOantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  extracellular exosome  
Ontology : EGO-EBIantigen binding  serine-type endopeptidase activity  extracellular region  extracellular region  plasma membrane  proteolysis  receptor-mediated endocytosis  immune response  complement activation  complement activation, classical pathway  Fc-epsilon receptor signaling pathway  Fc-gamma receptor signaling pathway involved in phagocytosis  regulation of immune response  leukocyte migration  extracellular exosome  
NDEx NetworkIGLV6-57
Atlas of Cancer Signalling NetworkIGLV6-57
Wikipedia pathwaysIGLV6-57
Orthology - Evolution
OrthoDB28778
Phylogenetic Trees/Animal Genes : TreeFamIGLV6-57
HOVERGENP01721
HOGENOMP01721
Homologs : HomoloGeneIGLV6-57
Homology/Alignments : Family Browser (UCSC)IGLV6-57
Gene fusions - Rearrangements
Tumor Fusion PortalIGLV6-57
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGLV6-57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGLV6-57
dbVarIGLV6-57
ClinVarIGLV6-57
1000_GenomesIGLV6-57 
Exome Variant ServerIGLV6-57
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP28778
Genomic Variants (DGV)IGLV6-57 [DGVbeta]
DECIPHERIGLV6-57 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGLV6-57 
Mutations
ICGC Data PortalIGLV6-57 
TCGA Data PortalIGLV6-57 
Broad Tumor PortalIGLV6-57
OASIS PortalIGLV6-57 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDIGLV6-57
BioMutasearch IGLV6-57
DgiDB (Drug Gene Interaction Database)IGLV6-57
DoCM (Curated mutations)IGLV6-57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGLV6-57 (select a term)
intoGenIGLV6-57
Cancer3DIGLV6-57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETIGLV6-57
MedgenIGLV6-57
Genetic Testing Registry IGLV6-57
NextProtP01721 [Medical]
TSGene28778
GENETestsIGLV6-57
Target ValidationIGLV6-57
Huge Navigator IGLV6-57 [HugePedia]
snp3D : Map Gene to Disease28778
BioCentury BCIQIGLV6-57
ClinGenIGLV6-57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28778
Chemical/Pharm GKB GenePA35470
Clinical trialIGLV6-57
Miscellaneous
canSAR (ICR)IGLV6-57 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGLV6-57
EVEXIGLV6-57
GoPubMedIGLV6-57
iHOPIGLV6-57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:43:46 CET 2017

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