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IGSF10 (immunoglobulin superfamily, member 10)

Identity

Alias_namesimmunoglobulin superfamily, member 10
Alias_symbol (synonym)FLJ25972
CMF608
Other alias
HGNC (Hugo) IGSF10
LocusID (NCBI) 285313
Atlas_Id 64576
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 151153778 and ends at 151158578 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGSF10   26384
Cards
Entrez_Gene (NCBI)IGSF10  285313  immunoglobulin superfamily, member 10
AliasesCMF608
GeneCards (Weizmann)IGSF10
Ensembl hg19 (Hinxton) [Gene_View]  chr3:151153778-151158578 [Contig_View]  IGSF10 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:151153778-151158578 [Contig_View]  IGSF10 [Vega]
TCGA cBioPortalIGSF10
AceView (NCBI)IGSF10
Genatlas (Paris)IGSF10
WikiGenes285313
SOURCE (Princeton)IGSF10
Genetics Home Reference (NIH)IGSF10
Genomic and cartography
GoldenPath hg19 (UCSC)IGSF10  -     chr3:151153778-151158578 -  3q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IGSF10  -     3q25.1   [Description]    (hg38-Dec_2013)
EnsemblIGSF10 - 3q25.1 [CytoView hg19]  IGSF10 - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBIIGSF10 [Mapview hg19]  IGSF10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093069 AK098838 AK128160 AY273815 BC031063
RefSeq transcript (Entrez)NM_001178145 NM_001178146 NM_178822
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)IGSF10
Cluster EST : UnigeneHs.58561 [ NCBI ]
CGAP (NCI)Hs.58561
Gene ExpressionIGSF10 [ NCBI-GEO ]   IGSF10 [ EBI - ARRAY_EXPRESS ]   IGSF10 [ SEEK ]   IGSF10 [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285313
GTEX Portal (Tissue expression)IGSF10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6WRI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6WRI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6WRI0
Splice isoforms : SwissVarQ6WRI0
PhosPhoSitePlusQ6WRI0
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR-contain_N   
Domain families : Pfam (Sanger)I-set (PF07679)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam07679    pfam13855   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)IGSF10
DMDM Disease mutations285313
Blocks (Seattle)IGSF10
SuperfamilyQ6WRI0
Peptide AtlasQ6WRI0
HPRD13732
IPIIPI00183913   IPI00478293   IPI00795608   IPI01009946   IPI00945109   
Protein Interaction databases
DIP (DOE-UCLA)Q6WRI0
IntAct (EBI)Q6WRI0
BioGRIDIGSF10
STRING (EMBL)IGSF10
ZODIACIGSF10
Ontologies - Pathways
QuickGOQ6WRI0
Ontology : AmiGOossification  extracellular region  multicellular organismal development  cell differentiation  
Ontology : EGO-EBIossification  extracellular region  multicellular organismal development  cell differentiation  
NDEx NetworkIGSF10
Atlas of Cancer Signalling NetworkIGSF10
Wikipedia pathwaysIGSF10
Orthology - Evolution
OrthoDB285313
Phylogenetic Trees/Animal Genes : TreeFamIGSF10
HOVERGENQ6WRI0
HOGENOMQ6WRI0
Homologs : HomoloGeneIGSF10
Homology/Alignments : Family Browser (UCSC)IGSF10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGSF10
dbVarIGSF10
ClinVarIGSF10
1000_GenomesIGSF10 
Exome Variant ServerIGSF10
ExAC (Exome Aggregation Consortium)IGSF10 (select the gene name)
Genetic variants : HAPMAP285313
Genomic Variants (DGV)IGSF10 [DGVbeta]
DECIPHER (Syndromes)3:151153778-151158578  
CONAN: Copy Number AnalysisIGSF10 
Mutations
ICGC Data PortalIGSF10 
TCGA Data PortalIGSF10 
Broad Tumor PortalIGSF10
OASIS PortalIGSF10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGSF10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGSF10
DgiDB (Drug Gene Interaction Database)IGSF10
DoCM (Curated mutations)IGSF10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGSF10 (select a term)
intoGenIGSF10
Cancer3DIGSF10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGSF10
Genetic Testing Registry IGSF10
NextProtQ6WRI0 [Medical]
TSGene285313
GENETestsIGSF10
Huge Navigator IGSF10 [HugePedia]
snp3D : Map Gene to Disease285313
BioCentury BCIQIGSF10
ClinGenIGSF10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285313
Chemical/Pharm GKB GenePA134900760
Clinical trialIGSF10
Miscellaneous
canSAR (ICR)IGSF10 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGSF10
EVEXIGSF10
GoPubMedIGSF10
iHOPIGSF10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:43 CET 2017

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