Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IGSF11 (immunoglobulin superfamily member 11)

Identity

Alias_namesimmunoglobulin superfamily
Alias_symbol (synonym)BT-IgSF
MGC35227
Igsf13
VSIG3
CT119
Other aliasCXADRL1
HGNC (Hugo) IGSF11
LocusID (NCBI) 152404
Atlas_Id 43673
Location 3q13.32  [Link to chromosome band 3q13]
Location_base_pair Starts at 118619479 and ends at 118753676 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IGSF11 (3q13.32) / PPP2R5B (11q13.1)MELTF (3q29) / IGSF11 (3q13.32)PBRM1 (3p21.1) / IGSF11 (3q13.32)
MFI2 3q29 / IGSF11 3q13.32PBRM1 3p21.1 / IGSF11 3q13.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGSF11   16669
Cards
Entrez_Gene (NCBI)IGSF11  152404  immunoglobulin superfamily member 11
AliasesBT-IgSF; CT119; CXADRL1; Igsf13; 
VSIG3
GeneCards (Weizmann)IGSF11
Ensembl hg19 (Hinxton)ENSG00000144847 [Gene_View]  chr3:118619479-118753676 [Contig_View]  IGSF11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000144847 [Gene_View]  chr3:118619479-118753676 [Contig_View]  IGSF11 [Vega]
ICGC DataPortalENSG00000144847
TCGA cBioPortalIGSF11
AceView (NCBI)IGSF11
Genatlas (Paris)IGSF11
WikiGenes152404
SOURCE (Princeton)IGSF11
Genetics Home Reference (NIH)IGSF11
Genomic and cartography
GoldenPath hg19 (UCSC)IGSF11  -     chr3:118619479-118753676 -  3q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IGSF11  -     3q13.32   [Description]    (hg38-Dec_2013)
EnsemblIGSF11 - 3q13.32 [CytoView hg19]  IGSF11 - 3q13.32 [CytoView hg38]
Mapping of homologs : NCBIIGSF11 [Mapview hg19]  IGSF11 [Mapview hg38]
OMIM608351   
Gene and transcription
Genbank (Entrez)AA292896 AB071618 AB079879 AK097667 AK122611
RefSeq transcript (Entrez)NM_001015887 NM_152538
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)IGSF11
Cluster EST : UnigeneHs.112873 [ NCBI ]
CGAP (NCI)Hs.112873
Alternative Splicing GalleryENSG00000144847
Gene ExpressionIGSF11 [ NCBI-GEO ]   IGSF11 [ EBI - ARRAY_EXPRESS ]   IGSF11 [ SEEK ]   IGSF11 [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152404
GTEX Portal (Tissue expression)IGSF11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5DX21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5DX21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5DX21
Splice isoforms : SwissVarQ5DX21
PhosPhoSitePlusQ5DX21
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13895    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)IGSF11
DMDM Disease mutations152404
Blocks (Seattle)IGSF11
SuperfamilyQ5DX21
Human Protein AtlasENSG00000144847
Peptide AtlasQ5DX21
HPRD16321
IPIIPI00185088   IPI00556294   IPI00797815   IPI00945709   IPI00945486   IPI00946033   IPI00945194   
Protein Interaction databases
DIP (DOE-UCLA)Q5DX21
IntAct (EBI)Q5DX21
FunCoupENSG00000144847
BioGRIDIGSF11
STRING (EMBL)IGSF11
ZODIACIGSF11
Ontologies - Pathways
QuickGOQ5DX21
Ontology : AmiGOplasma membrane  cell adhesion  integral component of membrane  regulation of growth  extracellular exosome  
Ontology : EGO-EBIplasma membrane  cell adhesion  integral component of membrane  regulation of growth  extracellular exosome  
NDEx NetworkIGSF11
Atlas of Cancer Signalling NetworkIGSF11
Wikipedia pathwaysIGSF11
Orthology - Evolution
OrthoDB152404
GeneTree (enSembl)ENSG00000144847
Phylogenetic Trees/Animal Genes : TreeFamIGSF11
HOVERGENQ5DX21
HOGENOMQ5DX21
Homologs : HomoloGeneIGSF11
Homology/Alignments : Family Browser (UCSC)IGSF11
Gene fusions - Rearrangements
Fusion : MitelmanMFI2/IGSF11 [3q29/3q13.32]  [t(3;3)(q13;q29)]  
Fusion : MitelmanPBRM1/IGSF11 [3p21.1/3q13.32]  [t(3;3)(p21;q13)]  
Fusion: TCGAMFI2 3q29 IGSF11 3q13.32 BLCA
Fusion: TCGAPBRM1 3p21.1 IGSF11 3q13.32 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGSF11
dbVarIGSF11
ClinVarIGSF11
1000_GenomesIGSF11 
Exome Variant ServerIGSF11
ExAC (Exome Aggregation Consortium)IGSF11 (select the gene name)
Genetic variants : HAPMAP152404
Genomic Variants (DGV)IGSF11 [DGVbeta]
DECIPHER (Syndromes)3:118619479-118753676  ENSG00000144847
CONAN: Copy Number AnalysisIGSF11 
Mutations
ICGC Data PortalIGSF11 
TCGA Data PortalIGSF11 
Broad Tumor PortalIGSF11
OASIS PortalIGSF11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGSF11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGSF11
DgiDB (Drug Gene Interaction Database)IGSF11
DoCM (Curated mutations)IGSF11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGSF11 (select a term)
intoGenIGSF11
Cancer3DIGSF11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608351   
Orphanet
MedgenIGSF11
Genetic Testing Registry IGSF11
NextProtQ5DX21 [Medical]
TSGene152404
GENETestsIGSF11
Huge Navigator IGSF11 [HugePedia]
snp3D : Map Gene to Disease152404
BioCentury BCIQIGSF11
ClinGenIGSF11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152404
Chemical/Pharm GKB GenePA134939253
Clinical trialIGSF11
Miscellaneous
canSAR (ICR)IGSF11 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGSF11
EVEXIGSF11
GoPubMedIGSF11
iHOPIGSF11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:04:57 CEST 2017

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