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IGSF21 (immunoglobin superfamily member 21)

Identity

Alias (NCBI)-
HGNC (Hugo) IGSF21
HGNC Alias symbMGC15730
RP11-121A23.1
HGNC Previous nameimmunoglobin superfamily, member 21
LocusID (NCBI) 84966
Atlas_Id 64578
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 18107798 and ends at 18378483 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGAP1 (2q37.2) / IGSF21 (1p36.13)IGSF21 (1p36.13) / LOC283624 ()OBSCN (1q42.13) / IGSF21 (1p36.13)
PPP6R1 (19q13.42) / IGSF21 (1p36.13)OBSCN IGSF21AGAP1 IGSF21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)IGSF21   28246
Cards
Entrez_Gene (NCBI)IGSF21    immunoglobin superfamily member 21
Aliases
GeneCards (Weizmann)IGSF21
Ensembl hg19 (Hinxton)ENSG00000117154 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117154 [Gene_View]  ENSG00000117154 [Sequence]  chr1:18107798-18378483 [Contig_View]  IGSF21 [Vega]
ICGC DataPortalENSG00000117154
TCGA cBioPortalIGSF21
AceView (NCBI)IGSF21
Genatlas (Paris)IGSF21
SOURCE (Princeton)IGSF21
Genetics Home Reference (NIH)IGSF21
Genomic and cartography
GoldenPath hg38 (UCSC)IGSF21  -     chr1:18107798-18378483 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGSF21  -     1p36.13   [Description]    (hg19-Feb_2009)
GoldenPathIGSF21 - 1p36.13 [CytoView hg19]  IGSF21 - 1p36.13 [CytoView hg38]
ImmunoBaseENSG00000117154
Genome Data Viewer NCBIIGSF21 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK075316 AK092618 AK123172 AK294121 BC007618
RefSeq transcript (Entrez)NM_032880
Consensus coding sequences : CCDS (NCBI)IGSF21
Gene ExpressionIGSF21 [ NCBI-GEO ]   IGSF21 [ EBI - ARRAY_EXPRESS ]   IGSF21 [ SEEK ]   IGSF21 [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF21 [ Firebrowse - Broad ]
GenevisibleExpression of IGSF21 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84966
GTEX Portal (Tissue expression)IGSF21
Human Protein AtlasENSG00000117154-IGSF21 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96ID5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96ID5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96ID5
PhosPhoSitePlusQ96ID5
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)IGSF21
SuperfamilyQ96ID5
AlphaFold pdb e-kbQ96ID5   
Human Protein Atlas [tissue]ENSG00000117154-IGSF21 [tissue]
HPRD11309
Protein Interaction databases
DIP (DOE-UCLA)Q96ID5
IntAct (EBI)Q96ID5
BioGRIDIGSF21
STRING (EMBL)IGSF21
ZODIACIGSF21
Ontologies - Pathways
QuickGOQ96ID5
Ontology : AmiGOadherens junction  homophilic cell adhesion via plasma membrane adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  anchored component of external side of plasma membrane  presynaptic membrane  postsynaptic membrane  synapse maturation  inhibitory synapse  
Ontology : EGO-EBIadherens junction  homophilic cell adhesion via plasma membrane adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  anchored component of external side of plasma membrane  presynaptic membrane  postsynaptic membrane  synapse maturation  inhibitory synapse  
NDEx NetworkIGSF21
Atlas of Cancer Signalling NetworkIGSF21
Wikipedia pathwaysIGSF21
Orthology - Evolution
OrthoDB84966
GeneTree (enSembl)ENSG00000117154
Phylogenetic Trees/Animal Genes : TreeFamIGSF21
Homologs : HomoloGeneIGSF21
Homology/Alignments : Family Browser (UCSC)IGSF21
Gene fusions - Rearrangements
Fusion : QuiverIGSF21
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGSF21
dbVarIGSF21
ClinVarIGSF21
MonarchIGSF21
1000_GenomesIGSF21 
Exome Variant ServerIGSF21
GNOMAD BrowserENSG00000117154
Varsome BrowserIGSF21
ACMGIGSF21 variants
VarityQ96ID5
Genomic Variants (DGV)IGSF21 [DGVbeta]
DECIPHERIGSF21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGSF21 
Mutations
ICGC Data PortalIGSF21 
TCGA Data PortalIGSF21 
Broad Tumor PortalIGSF21
OASIS PortalIGSF21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF21  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIGSF21
Mutations and Diseases : HGMDIGSF21
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaIGSF21
DgiDB (Drug Gene Interaction Database)IGSF21
DoCM (Curated mutations)IGSF21
CIViC (Clinical Interpretations of Variants in Cancer)IGSF21
Cancer3DIGSF21
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETIGSF21
MedgenIGSF21
Genetic Testing Registry IGSF21
NextProtQ96ID5 [Medical]
GENETestsIGSF21
Target ValidationIGSF21
Huge Navigator IGSF21 [HugePedia]
ClinGenIGSF21
Clinical trials, drugs, therapy
MyCancerGenomeIGSF21
Protein Interactions : CTDIGSF21
Pharm GKB GenePA142671661
PharosQ96ID5
Clinical trialIGSF21
Miscellaneous
canSAR (ICR)IGSF21
HarmonizomeIGSF21
DataMed IndexIGSF21
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIGSF21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:53:39 CEST 2021

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