Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IGSF21 (immunoglobin superfamily member 21)

Identity

Alias_namesimmunoglobin superfamily, member 21
Alias_symbol (synonym)MGC15730
RP11-121A23.1
Other alias-
HGNC (Hugo) IGSF21
LocusID (NCBI) 84966
Atlas_Id 64578
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 18107746 and ends at 18378483 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGAP1 (2q37.2) / IGSF21 (1p36.13)IGSF21 (1p36.13) / LOC283624 ()OBSCN (1q42.13) / IGSF21 (1p36.13)
PPP6R1 (19q13.42) / IGSF21 (1p36.13)OBSCN IGSF21AGAP1 IGSF21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGSF21   28246
Cards
Entrez_Gene (NCBI)IGSF21  84966  immunoglobin superfamily member 21
Aliases
GeneCards (Weizmann)IGSF21
Ensembl hg19 (Hinxton)ENSG00000117154 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117154 [Gene_View]  chr1:18107746-18378483 [Contig_View]  IGSF21 [Vega]
ICGC DataPortalENSG00000117154
TCGA cBioPortalIGSF21
AceView (NCBI)IGSF21
Genatlas (Paris)IGSF21
WikiGenes84966
SOURCE (Princeton)IGSF21
Genetics Home Reference (NIH)IGSF21
Genomic and cartography
GoldenPath hg38 (UCSC)IGSF21  -     chr1:18107746-18378483 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGSF21  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblIGSF21 - 1p36.13 [CytoView hg19]  IGSF21 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIIGSF21 [Mapview hg19]  IGSF21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK075316 AK092618 AK123172 AK294121 BC007618
RefSeq transcript (Entrez)NM_032880
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGSF21
Cluster EST : UnigeneHs.212511 [ NCBI ]
CGAP (NCI)Hs.212511
Alternative Splicing GalleryENSG00000117154
Gene ExpressionIGSF21 [ NCBI-GEO ]   IGSF21 [ EBI - ARRAY_EXPRESS ]   IGSF21 [ SEEK ]   IGSF21 [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84966
GTEX Portal (Tissue expression)IGSF21
Human Protein AtlasENSG00000117154-IGSF21 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96ID5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96ID5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96ID5
Splice isoforms : SwissVarQ96ID5
PhosPhoSitePlusQ96ID5
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)IGSF21
DMDM Disease mutations84966
Blocks (Seattle)IGSF21
SuperfamilyQ96ID5
Human Protein Atlas [tissue]ENSG00000117154-IGSF21 [tissue]
Peptide AtlasQ96ID5
HPRD11309
IPIIPI00301255   IPI00646142   
Protein Interaction databases
DIP (DOE-UCLA)Q96ID5
IntAct (EBI)Q96ID5
FunCoupENSG00000117154
BioGRIDIGSF21
STRING (EMBL)IGSF21
ZODIACIGSF21
Ontologies - Pathways
QuickGOQ96ID5
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkIGSF21
Atlas of Cancer Signalling NetworkIGSF21
Wikipedia pathwaysIGSF21
Orthology - Evolution
OrthoDB84966
GeneTree (enSembl)ENSG00000117154
Phylogenetic Trees/Animal Genes : TreeFamIGSF21
HOVERGENQ96ID5
HOGENOMQ96ID5
Homologs : HomoloGeneIGSF21
Homology/Alignments : Family Browser (UCSC)IGSF21
Gene fusions - Rearrangements
Fusion: TCGAOBSCN IGSF21
Fusion: TCGAAGAP1 IGSF21
Fusion: Tumor Portal IGSF21
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGSF21
dbVarIGSF21
ClinVarIGSF21
1000_GenomesIGSF21 
Exome Variant ServerIGSF21
ExAC (Exome Aggregation Consortium)ENSG00000117154
GNOMAD BrowserENSG00000117154
Genetic variants : HAPMAP84966
Genomic Variants (DGV)IGSF21 [DGVbeta]
DECIPHERIGSF21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGSF21 
Mutations
ICGC Data PortalIGSF21 
TCGA Data PortalIGSF21 
Broad Tumor PortalIGSF21
OASIS PortalIGSF21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGSF21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGSF21
DgiDB (Drug Gene Interaction Database)IGSF21
DoCM (Curated mutations)IGSF21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGSF21 (select a term)
intoGenIGSF21
Cancer3DIGSF21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGSF21
Genetic Testing Registry IGSF21
NextProtQ96ID5 [Medical]
TSGene84966
GENETestsIGSF21
Target ValidationIGSF21
Huge Navigator IGSF21 [HugePedia]
snp3D : Map Gene to Disease84966
BioCentury BCIQIGSF21
ClinGenIGSF21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84966
Chemical/Pharm GKB GenePA142671661
Clinical trialIGSF21
Miscellaneous
canSAR (ICR)IGSF21 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGSF21
EVEXIGSF21
GoPubMedIGSF21
iHOPIGSF21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:51:27 CET 2017

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