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IGSF22 (immunoglobulin superfamily member 22)

Identity

Alias_namesimmunoglobulin superfamily, member 22
Alias_symbol (synonym)FLJ37794
IGFN2
Other alias
HGNC (Hugo) IGSF22
LocusID (NCBI) 283284
Atlas_Id 64579
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 18704305 and ends at 18726230 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGSF22   26750
Cards
Entrez_Gene (NCBI)IGSF22  283284  immunoglobulin superfamily member 22
AliasesIGFN2
GeneCards (Weizmann)IGSF22
Ensembl hg19 (Hinxton)ENSG00000179057 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179057 [Gene_View]  chr11:18704305-18726230 [Contig_View]  IGSF22 [Vega]
ICGC DataPortalENSG00000179057
TCGA cBioPortalIGSF22
AceView (NCBI)IGSF22
Genatlas (Paris)IGSF22
WikiGenes283284
SOURCE (Princeton)IGSF22
Genetics Home Reference (NIH)IGSF22
Genomic and cartography
GoldenPath hg38 (UCSC)IGSF22  -     chr11:18704305-18726230 -  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGSF22  -     11p15.1   [Description]    (hg19-Feb_2009)
EnsemblIGSF22 - 11p15.1 [CytoView hg19]  IGSF22 - 11p15.1 [CytoView hg38]
Mapping of homologs : NCBIIGSF22 [Mapview hg19]  IGSF22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA255875 AI952274 AK095113 BC115396 BC115397
RefSeq transcript (Entrez)NM_173588
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGSF22
Cluster EST : UnigeneHs.434152 [ NCBI ]
CGAP (NCI)Hs.434152
Alternative Splicing GalleryENSG00000179057
Gene ExpressionIGSF22 [ NCBI-GEO ]   IGSF22 [ EBI - ARRAY_EXPRESS ]   IGSF22 [ SEEK ]   IGSF22 [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283284
GTEX Portal (Tissue expression)IGSF22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9C0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9C0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9C0
Splice isoforms : SwissVarQ8N9C0
PhosPhoSitePlusQ8N9C0
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)IGSF22
DMDM Disease mutations283284
Blocks (Seattle)IGSF22
SuperfamilyQ8N9C0
Human Protein AtlasENSG00000179057
Peptide AtlasQ8N9C0
HPRD08229
IPIIPI00180325   IPI00966130   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9C0
IntAct (EBI)Q8N9C0
FunCoupENSG00000179057
BioGRIDIGSF22
STRING (EMBL)IGSF22
ZODIACIGSF22
Ontologies - Pathways
QuickGOQ8N9C0
Ontology : AmiGOmuscle myosin complex  striated muscle contraction  actin filament organization  structural constituent of muscle  Z disc  M band  sarcomere organization  actin filament binding  muscle alpha-actinin binding  striated muscle myosin thick filament assembly  structural molecule activity conferring elasticity  
Ontology : EGO-EBImuscle myosin complex  striated muscle contraction  actin filament organization  structural constituent of muscle  Z disc  M band  sarcomere organization  actin filament binding  muscle alpha-actinin binding  striated muscle myosin thick filament assembly  structural molecule activity conferring elasticity  
NDEx NetworkIGSF22
Atlas of Cancer Signalling NetworkIGSF22
Wikipedia pathwaysIGSF22
Orthology - Evolution
OrthoDB283284
GeneTree (enSembl)ENSG00000179057
Phylogenetic Trees/Animal Genes : TreeFamIGSF22
HOVERGENQ8N9C0
HOGENOMQ8N9C0
Homologs : HomoloGeneIGSF22
Homology/Alignments : Family Browser (UCSC)IGSF22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGSF22
dbVarIGSF22
ClinVarIGSF22
1000_GenomesIGSF22 
Exome Variant ServerIGSF22
ExAC (Exome Aggregation Consortium)IGSF22 (select the gene name)
Genetic variants : HAPMAP283284
Genomic Variants (DGV)IGSF22 [DGVbeta]
DECIPHERIGSF22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGSF22 
Mutations
ICGC Data PortalIGSF22 
TCGA Data PortalIGSF22 
Broad Tumor PortalIGSF22
OASIS PortalIGSF22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGSF22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGSF22
DgiDB (Drug Gene Interaction Database)IGSF22
DoCM (Curated mutations)IGSF22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGSF22 (select a term)
intoGenIGSF22
Cancer3DIGSF22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGSF22
Genetic Testing Registry IGSF22
NextProtQ8N9C0 [Medical]
TSGene283284
GENETestsIGSF22
Huge Navigator IGSF22 [HugePedia]
snp3D : Map Gene to Disease283284
BioCentury BCIQIGSF22
ClinGenIGSF22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283284
Chemical/Pharm GKB GenePA142671662
Clinical trialIGSF22
Miscellaneous
canSAR (ICR)IGSF22 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGSF22
EVEXIGSF22
GoPubMedIGSF22
iHOPIGSF22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:16:46 CEST 2017

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