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IGSF22 (immunoglobulin superfamily member 22)

Identity

Alias (NCBI)IGFN2
HGNC (Hugo) IGSF22
HGNC Alias symbFLJ37794
IGFN2
HGNC Previous nameimmunoglobulin superfamily, member 22
LocusID (NCBI) 283284
Atlas_Id 64579
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 18704305 and ends at 18726230 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)IGSF22   26750
Cards
Entrez_Gene (NCBI)IGSF22    immunoglobulin superfamily member 22
AliasesIGFN2
GeneCards (Weizmann)IGSF22
Ensembl hg19 (Hinxton)ENSG00000179057 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179057 [Gene_View]  ENSG00000179057 [Sequence]  chr11:18704305-18726230 [Contig_View]  IGSF22 [Vega]
ICGC DataPortalENSG00000179057
TCGA cBioPortalIGSF22
AceView (NCBI)IGSF22
Genatlas (Paris)IGSF22
SOURCE (Princeton)IGSF22
Genetics Home Reference (NIH)IGSF22
Genomic and cartography
GoldenPath hg38 (UCSC)IGSF22  -     chr11:18704305-18726230 -  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGSF22  -     11p15.1   [Description]    (hg19-Feb_2009)
GoldenPathIGSF22 - 11p15.1 [CytoView hg19]  IGSF22 - 11p15.1 [CytoView hg38]
ImmunoBaseENSG00000179057
genome Data Viewer NCBIIGSF22 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA255875 AI952274 AK095113 BC115396 BC115397
RefSeq transcript (Entrez)NM_173588
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGSF22
Alternative Splicing GalleryENSG00000179057
Gene ExpressionIGSF22 [ NCBI-GEO ]   IGSF22 [ EBI - ARRAY_EXPRESS ]   IGSF22 [ SEEK ]   IGSF22 [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF22 [ Firebrowse - Broad ]
GenevisibleExpression of IGSF22 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283284
GTEX Portal (Tissue expression)IGSF22
Human Protein AtlasENSG00000179057-IGSF22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9C0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9C0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9C0
Splice isoforms : SwissVarQ8N9C0
PhosPhoSitePlusQ8N9C0
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    FN3_sf    Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    MyBP-C_THB   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)    THB (PF18362)   
Domain families : Pfam (NCBI)pfam00041    pfam07679    pfam18362   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)IGSF22
Blocks (Seattle)IGSF22
SuperfamilyQ8N9C0
Human Protein Atlas [tissue]ENSG00000179057-IGSF22 [tissue]
Peptide AtlasQ8N9C0
HPRD08229
IPIIPI00180325   IPI00966130   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9C0
IntAct (EBI)Q8N9C0
BioGRIDIGSF22
STRING (EMBL)IGSF22
ZODIACIGSF22
Ontologies - Pathways
QuickGOQ8N9C0
Ontology : AmiGOsarcomere  
Ontology : EGO-EBIsarcomere  
NDEx NetworkIGSF22
Atlas of Cancer Signalling NetworkIGSF22
Wikipedia pathwaysIGSF22
Orthology - Evolution
OrthoDB283284
GeneTree (enSembl)ENSG00000179057
Phylogenetic Trees/Animal Genes : TreeFamIGSF22
HOGENOMQ8N9C0
Homologs : HomoloGeneIGSF22
Homology/Alignments : Family Browser (UCSC)IGSF22
Gene fusions - Rearrangements
Fusion : QuiverIGSF22
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF22 [hg38]
dbVarIGSF22
ClinVarIGSF22
MonarchIGSF22
1000_GenomesIGSF22 
Exome Variant ServerIGSF22
GNOMAD BrowserENSG00000179057
Varsome BrowserIGSF22
Genomic Variants (DGV)IGSF22 [DGVbeta]
DECIPHERIGSF22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGSF22 
Mutations
ICGC Data PortalIGSF22 
TCGA Data PortalIGSF22 
Broad Tumor PortalIGSF22
OASIS PortalIGSF22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF22  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIGSF22
Mutations and Diseases : HGMDIGSF22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGSF22
DgiDB (Drug Gene Interaction Database)IGSF22
DoCM (Curated mutations)IGSF22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGSF22 (select a term)
intoGenIGSF22
Cancer3DIGSF22(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETIGSF22
MedgenIGSF22
Genetic Testing Registry IGSF22
NextProtQ8N9C0 [Medical]
GENETestsIGSF22
Target ValidationIGSF22
Huge Navigator IGSF22 [HugePedia]
ClinGenIGSF22
Clinical trials, drugs, therapy
MyCancerGenomeIGSF22
Protein Interactions : CTD
Pharm GKB GenePA142671662
Clinical trialIGSF22
Miscellaneous
canSAR (ICR)IGSF22 (select the gene name)
HarmonizomeIGSF22
DataMed IndexIGSF22
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGSF22
EVEXIGSF22
GoPubMedIGSF22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:57:45 CET 2020

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