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IGSF23 (immunoglobulin superfamily member 23)

Identity

Alias_namesimmunoglobulin superfamily, member 23
Other alias-
HGNC (Hugo) IGSF23
LocusID (NCBI) 147710
Atlas_Id 64580
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44613630 and ends at 44636781 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCL3 (19q13.32) / IGSF23 (19q13.31)CLPTM1 (19q13.32) / IGSF23 (19q13.31)PPP1R37 (19q13.32) / IGSF23 (19q13.31)
RELB (19q13.32) / IGSF23 (19q13.31)ZNF675 (19p12) / IGSF23 (19q13.31)ZNF675 IGSF23
BCL3 IGSF23RELB IGSF23CLPTM1 IGSF23
LRRC68 IGSF23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGSF23   40040
Cards
Entrez_Gene (NCBI)IGSF23  147710  immunoglobulin superfamily member 23
Aliases
GeneCards (Weizmann)IGSF23
Ensembl hg19 (Hinxton)ENSG00000216588 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000216588 [Gene_View]  chr19:44613630-44636781 [Contig_View]  IGSF23 [Vega]
ICGC DataPortalENSG00000216588
TCGA cBioPortalIGSF23
AceView (NCBI)IGSF23
Genatlas (Paris)IGSF23
WikiGenes147710
SOURCE (Princeton)IGSF23
Genetics Home Reference (NIH)IGSF23
Genomic and cartography
GoldenPath hg38 (UCSC)IGSF23  -     chr19:44613630-44636781 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGSF23  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblIGSF23 - 19q13.31 [CytoView hg19]  IGSF23 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIIGSF23 [Mapview hg19]  IGSF23 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC127928 BC127929 BG197674 BX112065
RefSeq transcript (Entrez)NM_001205280
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGSF23
Cluster EST : UnigeneHs.512509 [ NCBI ]
CGAP (NCI)Hs.512509
Alternative Splicing GalleryENSG00000216588
Gene ExpressionIGSF23 [ NCBI-GEO ]   IGSF23 [ EBI - ARRAY_EXPRESS ]   IGSF23 [ SEEK ]   IGSF23 [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147710
GTEX Portal (Tissue expression)IGSF23
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L1A6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L1A6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L1A6
Splice isoforms : SwissVarA1L1A6
PhosPhoSitePlusA1L1A6
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)IGSF23
DMDM Disease mutations147710
Blocks (Seattle)IGSF23
SuperfamilyA1L1A6
Human Protein AtlasENSG00000216588
Peptide AtlasA1L1A6
IPIIPI00893880   IPI00894136   IPI00894271   
Protein Interaction databases
DIP (DOE-UCLA)A1L1A6
IntAct (EBI)A1L1A6
FunCoupENSG00000216588
BioGRIDIGSF23
STRING (EMBL)IGSF23
ZODIACIGSF23
Ontologies - Pathways
QuickGOA1L1A6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkIGSF23
Atlas of Cancer Signalling NetworkIGSF23
Wikipedia pathwaysIGSF23
Orthology - Evolution
OrthoDB147710
GeneTree (enSembl)ENSG00000216588
Phylogenetic Trees/Animal Genes : TreeFamIGSF23
HOVERGENA1L1A6
HOGENOMA1L1A6
Homologs : HomoloGeneIGSF23
Homology/Alignments : Family Browser (UCSC)IGSF23
Gene fusions - Rearrangements
Fusion: TCGAZNF675 IGSF23
Fusion: TCGABCL3 IGSF23
Fusion: TCGARELB IGSF23
Fusion: TCGACLPTM1 IGSF23
Fusion: TCGALRRC68 IGSF23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGSF23
dbVarIGSF23
ClinVarIGSF23
1000_GenomesIGSF23 
Exome Variant ServerIGSF23
ExAC (Exome Aggregation Consortium)IGSF23 (select the gene name)
Genetic variants : HAPMAP147710
Genomic Variants (DGV)IGSF23 [DGVbeta]
DECIPHERIGSF23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGSF23 
Mutations
ICGC Data PortalIGSF23 
TCGA Data PortalIGSF23 
Broad Tumor PortalIGSF23
OASIS PortalIGSF23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGSF23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch IGSF23
DgiDB (Drug Gene Interaction Database)IGSF23
DoCM (Curated mutations)IGSF23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGSF23 (select a term)
intoGenIGSF23
Cancer3DIGSF23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenIGSF23
Genetic Testing Registry IGSF23
NextProtA1L1A6 [Medical]
TSGene147710
GENETestsIGSF23
Huge Navigator IGSF23 [HugePedia]
snp3D : Map Gene to Disease147710
BioCentury BCIQIGSF23
ClinGenIGSF23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147710
Chemical/Pharm GKB GenePA166049060
Clinical trialIGSF23
Miscellaneous
canSAR (ICR)IGSF23 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGSF23
EVEXIGSF23
GoPubMedIGSF23
iHOPIGSF23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:16:47 CEST 2017

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