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IGSF3 (immunoglobulin superfamily member 3)

Identity

Alias (NCBI)EWI-3
LCDD
V8
HGNC (Hugo) IGSF3
HGNC Alias symbV8
EWI-3
MGC117164
HGNC Previous nameimmunoglobulin superfamily, member 3
LocusID (NCBI) 3321
Atlas_Id 54375
Location 1p13.1  [Link to chromosome band 1p13]
Location_base_pair Starts at 116574398 and ends at 116667755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IGSF3 (1p13.1) / GGT1 (22q11.23)IGSF3 (1p13.1) / KDM2A (11q13.2)IGSF3 (1p13.1) / MAN1A2 (1p12)
IGSF3 (1p13.1) / TBX15 (1p12)TTC28 (22q12.1) / IGSF3 (1p13.1)IGSF3 1p13.1 / KDM2A 11q13.2
IGSF3 1p13.1 / MAN1A2 1p12IGSF3 1p13.1 / TBX15 1p12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)IGSF3   5950
Cards
Entrez_Gene (NCBI)IGSF3    immunoglobulin superfamily member 3
AliasesEWI-3; LCDD; V8
GeneCards (Weizmann)IGSF3
Ensembl hg19 (Hinxton)ENSG00000143061 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143061 [Gene_View]  ENSG00000143061 [Sequence]  chr1:116574398-116667755 [Contig_View]  IGSF3 [Vega]
ICGC DataPortalENSG00000143061
TCGA cBioPortalIGSF3
AceView (NCBI)IGSF3
Genatlas (Paris)IGSF3
SOURCE (Princeton)IGSF3
Genetics Home Reference (NIH)IGSF3
Genomic and cartography
GoldenPath hg38 (UCSC)IGSF3  -     chr1:116574398-116667755 -  1p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGSF3  -     1p13.1   [Description]    (hg19-Feb_2009)
GoldenPathIGSF3 - 1p13.1 [CytoView hg19]  IGSF3 - 1p13.1 [CytoView hg38]
ImmunoBaseENSG00000143061
Genome Data Viewer NCBIIGSF3 [Mapview hg19]  
OMIM149700   603491   
Gene and transcription
Genbank (Entrez)AB007935 AF031174 AI968231 AK097809 BC110651
RefSeq transcript (Entrez)NM_001007237 NM_001542
Consensus coding sequences : CCDS (NCBI)IGSF3
Gene ExpressionIGSF3 [ NCBI-GEO ]   IGSF3 [ EBI - ARRAY_EXPRESS ]   IGSF3 [ SEEK ]   IGSF3 [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF3 [ Firebrowse - Broad ]
GenevisibleExpression of IGSF3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3321
GTEX Portal (Tissue expression)IGSF3
Human Protein AtlasENSG00000143061-IGSF3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75054   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75054  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75054
PhosPhoSitePlusO75054
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  
Conserved Domain (NCBI)IGSF3
SuperfamilyO75054
AlphaFold pdb e-kbO75054   
Human Protein Atlas [tissue]ENSG00000143061-IGSF3 [tissue]
HPRD04602
Protein Interaction databases
DIP (DOE-UCLA)O75054
IntAct (EBI)O75054
BioGRIDIGSF3
STRING (EMBL)IGSF3
ZODIACIGSF3
Ontologies - Pathways
QuickGOO75054
Ontology : AmiGOmolecular_function  cell surface  integral component of membrane  lacrimal gland development  
Ontology : EGO-EBImolecular_function  cell surface  integral component of membrane  lacrimal gland development  
NDEx NetworkIGSF3
Atlas of Cancer Signalling NetworkIGSF3
Wikipedia pathwaysIGSF3
Orthology - Evolution
OrthoDB3321
GeneTree (enSembl)ENSG00000143061
Phylogenetic Trees/Animal Genes : TreeFamIGSF3
Homologs : HomoloGeneIGSF3
Homology/Alignments : Family Browser (UCSC)IGSF3
Gene fusions - Rearrangements
Fusion : MitelmanIGSF3/GGT1 [1p13.1/22q11.23]  
Fusion : MitelmanIGSF3/KDM2A [1p13.1/11q13.2]  
Fusion : MitelmanIGSF3/MAN1A2 [1p13.1/1p12]  
Fusion : MitelmanIGSF3/TBX15 [1p13.1/1p12]  
Fusion : QuiverIGSF3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGSF3
dbVarIGSF3
ClinVarIGSF3
MonarchIGSF3
1000_GenomesIGSF3 
Exome Variant ServerIGSF3
GNOMAD BrowserENSG00000143061
Varsome BrowserIGSF3
ACMGIGSF3 variants
VarityO75054
Genomic Variants (DGV)IGSF3 [DGVbeta]
DECIPHERIGSF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGSF3 
Mutations
ICGC Data PortalIGSF3 
TCGA Data PortalIGSF3 
Broad Tumor PortalIGSF3
OASIS PortalIGSF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIGSF3
Mutations and Diseases : HGMDIGSF3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaIGSF3
DgiDB (Drug Gene Interaction Database)IGSF3
DoCM (Curated mutations)IGSF3
CIViC (Clinical Interpretations of Variants in Cancer)IGSF3
Cancer3DIGSF3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM149700    603491   
Orphanet23643   
DisGeNETIGSF3
MedgenIGSF3
Genetic Testing Registry IGSF3
NextProtO75054 [Medical]
GENETestsIGSF3
Target ValidationIGSF3
Huge Navigator IGSF3 [HugePedia]
ClinGenIGSF3
Clinical trials, drugs, therapy
MyCancerGenomeIGSF3
Protein Interactions : CTDIGSF3
Pharm GKB GenePA29763
PharosO75054
Clinical trialIGSF3
Miscellaneous
canSAR (ICR)IGSF3
HarmonizomeIGSF3
DataMed IndexIGSF3
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXIGSF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:13:39 CEST 2021

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