Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IGSF5 (immunoglobulin superfamily member 5)

Identity

Alias_namesimmunoglobulin superfamily, member 5
Alias_symbol (synonym)JAM4
Other aliasGSF5
HGNC (Hugo) IGSF5
LocusID (NCBI) 150084
Atlas_Id 64581
Location 21q22.2  [Link to chromosome band 21q22]
Location_base_pair Starts at 39745407 and ends at 39802096 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DSCR3 (21q22.13) / IGSF5 (21q22.2)IGSF5 (21q22.2) / PCP4 (21q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGSF5   5952
Cards
Entrez_Gene (NCBI)IGSF5  150084  immunoglobulin superfamily member 5
AliasesGSF5; JAM4
GeneCards (Weizmann)IGSF5
Ensembl hg19 (Hinxton)ENSG00000183067 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183067 [Gene_View]  chr21:39745407-39802096 [Contig_View]  IGSF5 [Vega]
ICGC DataPortalENSG00000183067
TCGA cBioPortalIGSF5
AceView (NCBI)IGSF5
Genatlas (Paris)IGSF5
WikiGenes150084
SOURCE (Princeton)IGSF5
Genetics Home Reference (NIH)IGSF5
Genomic and cartography
GoldenPath hg38 (UCSC)IGSF5  -     chr21:39745407-39802096 +  21q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGSF5  -     21q22.2   [Description]    (hg19-Feb_2009)
EnsemblIGSF5 - 21q22.2 [CytoView hg19]  IGSF5 - 21q22.2 [CytoView hg38]
Mapping of homologs : NCBIIGSF5 [Mapview hg19]  IGSF5 [Mapview hg38]
OMIM610638   
Gene and transcription
Genbank (Entrez)AK092516 BC114922 BC156232 BC157006
RefSeq transcript (Entrez)NM_001080444
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGSF5
Cluster EST : UnigeneHs.422120 [ NCBI ]
CGAP (NCI)Hs.422120
Alternative Splicing GalleryENSG00000183067
Gene ExpressionIGSF5 [ NCBI-GEO ]   IGSF5 [ EBI - ARRAY_EXPRESS ]   IGSF5 [ SEEK ]   IGSF5 [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150084
GTEX Portal (Tissue expression)IGSF5
Human Protein AtlasENSG00000183067-IGSF5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSI5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSI5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSI5
Splice isoforms : SwissVarQ9NSI5
PhosPhoSitePlusQ9NSI5
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub   
Domain families : Pfam (Sanger)I-set (PF07679)   
Domain families : Pfam (NCBI)pfam07679   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)IGSF5
DMDM Disease mutations150084
Blocks (Seattle)IGSF5
SuperfamilyQ9NSI5
Human Protein Atlas [tissue]ENSG00000183067-IGSF5 [tissue]
Peptide AtlasQ9NSI5
IPIIPI00245940   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSI5
IntAct (EBI)Q9NSI5
FunCoupENSG00000183067
BioGRIDIGSF5
STRING (EMBL)IGSF5
ZODIACIGSF5
Ontologies - Pathways
QuickGOQ9NSI5
Ontology : AmiGObicellular tight junction  integral component of membrane  apical plasma membrane  
Ontology : EGO-EBIbicellular tight junction  integral component of membrane  apical plasma membrane  
Pathways : KEGGTight junction    Epithelial cell signaling in Helicobacter pylori infection   
NDEx NetworkIGSF5
Atlas of Cancer Signalling NetworkIGSF5
Wikipedia pathwaysIGSF5
Orthology - Evolution
OrthoDB150084
GeneTree (enSembl)ENSG00000183067
Phylogenetic Trees/Animal Genes : TreeFamIGSF5
HOVERGENQ9NSI5
HOGENOMQ9NSI5
Homologs : HomoloGeneIGSF5
Homology/Alignments : Family Browser (UCSC)IGSF5
Gene fusions - Rearrangements
Tumor Fusion PortalIGSF5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGSF5
dbVarIGSF5
ClinVarIGSF5
1000_GenomesIGSF5 
Exome Variant ServerIGSF5
ExAC (Exome Aggregation Consortium)ENSG00000183067
GNOMAD BrowserENSG00000183067
Genetic variants : HAPMAP150084
Genomic Variants (DGV)IGSF5 [DGVbeta]
DECIPHERIGSF5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGSF5 
Mutations
ICGC Data PortalIGSF5 
TCGA Data PortalIGSF5 
Broad Tumor PortalIGSF5
OASIS PortalIGSF5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGSF5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGSF5
DgiDB (Drug Gene Interaction Database)IGSF5
DoCM (Curated mutations)IGSF5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGSF5 (select a term)
intoGenIGSF5
Cancer3DIGSF5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610638   
Orphanet
DisGeNETIGSF5
MedgenIGSF5
Genetic Testing Registry IGSF5
NextProtQ9NSI5 [Medical]
TSGene150084
GENETestsIGSF5
Target ValidationIGSF5
Huge Navigator IGSF5 [HugePedia]
snp3D : Map Gene to Disease150084
BioCentury BCIQIGSF5
ClinGenIGSF5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150084
Chemical/Pharm GKB GenePA29765
Clinical trialIGSF5
Miscellaneous
canSAR (ICR)IGSF5 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGSF5
EVEXIGSF5
GoPubMedIGSF5
iHOPIGSF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:42:41 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.