Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IGSF6 (immunoglobulin superfamily member 6)

Identity

Alias_namesimmunoglobulin superfamily, member 6
Alias_symbol (synonym)DORA
Other alias
HGNC (Hugo) IGSF6
LocusID (NCBI) 10261
Atlas_Id 64582
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 21641284 and ends at 21652666 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGSF6   5953
Cards
Entrez_Gene (NCBI)IGSF6  10261  immunoglobulin superfamily member 6
AliasesDORA
GeneCards (Weizmann)IGSF6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:21641284-21652666 [Contig_View]  IGSF6 [Vega]
TCGA cBioPortalIGSF6
AceView (NCBI)IGSF6
Genatlas (Paris)IGSF6
WikiGenes10261
SOURCE (Princeton)IGSF6
Genetics Home Reference (NIH)IGSF6
Genomic and cartography
GoldenPath hg38 (UCSC)IGSF6  -     chr16:21641284-21652666 -  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGSF6  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblIGSF6 - 16p12.2 [CytoView hg19]  IGSF6 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBIIGSF6 [Mapview hg19]  IGSF6 [Mapview hg38]
OMIM606222   
Gene and transcription
Genbank (Entrez)AJ223183 AK223286 AK290910 AK293703 AK313860
RefSeq transcript (Entrez)NM_005849
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGSF6
Cluster EST : UnigeneHs.530902 [ NCBI ]
CGAP (NCI)Hs.530902
Gene ExpressionIGSF6 [ NCBI-GEO ]   IGSF6 [ EBI - ARRAY_EXPRESS ]   IGSF6 [ SEEK ]   IGSF6 [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10261
GTEX Portal (Tissue expression)IGSF6
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95976   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95976  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95976
Splice isoforms : SwissVarO95976
PhosPhoSitePlusO95976
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)IGSF6
DMDM Disease mutations10261
Blocks (Seattle)IGSF6
SuperfamilyO95976
Peptide AtlasO95976
HPRD06938
IPIIPI00025142   
Protein Interaction databases
DIP (DOE-UCLA)O95976
IntAct (EBI)O95976
BioGRIDIGSF6
STRING (EMBL)IGSF6
ZODIACIGSF6
Ontologies - Pathways
QuickGOO95976
Ontology : AmiGOtransmembrane signaling receptor activity  integral component of plasma membrane  immune response  cell surface receptor signaling pathway  
Ontology : EGO-EBItransmembrane signaling receptor activity  integral component of plasma membrane  immune response  cell surface receptor signaling pathway  
NDEx NetworkIGSF6
Atlas of Cancer Signalling NetworkIGSF6
Wikipedia pathwaysIGSF6
Orthology - Evolution
OrthoDB10261
Phylogenetic Trees/Animal Genes : TreeFamIGSF6
HOVERGENO95976
HOGENOMO95976
Homologs : HomoloGeneIGSF6
Homology/Alignments : Family Browser (UCSC)IGSF6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGSF6
dbVarIGSF6
ClinVarIGSF6
1000_GenomesIGSF6 
Exome Variant ServerIGSF6
ExAC (Exome Aggregation Consortium)IGSF6 (select the gene name)
Genetic variants : HAPMAP10261
Genomic Variants (DGV)IGSF6 [DGVbeta]
DECIPHERIGSF6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGSF6 
Mutations
ICGC Data PortalIGSF6 
TCGA Data PortalIGSF6 
Broad Tumor PortalIGSF6
OASIS PortalIGSF6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGSF6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGSF6
DgiDB (Drug Gene Interaction Database)IGSF6
DoCM (Curated mutations)IGSF6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGSF6 (select a term)
intoGenIGSF6
Cancer3DIGSF6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606222   
Orphanet
MedgenIGSF6
Genetic Testing Registry IGSF6
NextProtO95976 [Medical]
TSGene10261
GENETestsIGSF6
Target ValidationIGSF6
Huge Navigator IGSF6 [HugePedia]
snp3D : Map Gene to Disease10261
BioCentury BCIQIGSF6
ClinGenIGSF6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10261
Chemical/Pharm GKB GenePA29766
Clinical trialIGSF6
Miscellaneous
canSAR (ICR)IGSF6 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGSF6
EVEXIGSF6
GoPubMedIGSF6
iHOPIGSF6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:11:08 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.