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IGSF9 (immunoglobulin superfamily member 9)

Identity

Alias_namesimmunoglobulin superfamily, member 9
Alias_symbol (synonym)KIAA1355
Nrt1
IGSF9A
Other aliasFP18798
HGNC (Hugo) IGSF9
LocusID (NCBI) 57549
Atlas_Id 64583
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 159927039 and ends at 159945596 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAPNS1 (19q13.12) / IGSF9 (1q23.2)IGSF9 (1q23.2) / IGSF9 (1q23.2)IGSF9 (1q23.2) / SLAMF9 (1q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGSF9   18132
Cards
Entrez_Gene (NCBI)IGSF9  57549  immunoglobulin superfamily member 9
AliasesFP18798; IGSF9A; Nrt1
GeneCards (Weizmann)IGSF9
Ensembl hg19 (Hinxton)ENSG00000085552 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000085552 [Gene_View]  chr1:159927039-159945596 [Contig_View]  IGSF9 [Vega]
ICGC DataPortalENSG00000085552
TCGA cBioPortalIGSF9
AceView (NCBI)IGSF9
Genatlas (Paris)IGSF9
WikiGenes57549
SOURCE (Princeton)IGSF9
Genetics Home Reference (NIH)IGSF9
Genomic and cartography
GoldenPath hg38 (UCSC)IGSF9  -     chr1:159927039-159945596 -  1q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGSF9  -     1q23.2   [Description]    (hg19-Feb_2009)
EnsemblIGSF9 - 1q23.2 [CytoView hg19]  IGSF9 - 1q23.2 [CytoView hg38]
Mapping of homologs : NCBIIGSF9 [Mapview hg19]  IGSF9 [Mapview hg38]
OMIM609738   
Gene and transcription
Genbank (Entrez)AB037776 AI758999 AK056650 AY203932 AY358128
RefSeq transcript (Entrez)NM_001135050 NM_020789
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGSF9
Cluster EST : UnigeneHs.591472 [ NCBI ]
CGAP (NCI)Hs.591472
Alternative Splicing GalleryENSG00000085552
Gene ExpressionIGSF9 [ NCBI-GEO ]   IGSF9 [ EBI - ARRAY_EXPRESS ]   IGSF9 [ SEEK ]   IGSF9 [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57549
GTEX Portal (Tissue expression)IGSF9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2J2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2J2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2J2
Splice isoforms : SwissVarQ9P2J2
PhosPhoSitePlusQ9P2J2
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)IGSF9
DMDM Disease mutations57549
Blocks (Seattle)IGSF9
PDB (SRS)1V5J   
PDB (PDBSum)1V5J   
PDB (IMB)1V5J   
PDB (RSDB)1V5J   
Structural Biology KnowledgeBase1V5J   
SCOP (Structural Classification of Proteins)1V5J   
CATH (Classification of proteins structures)1V5J   
SuperfamilyQ9P2J2
Human Protein AtlasENSG00000085552
Peptide AtlasQ9P2J2
HPRD10001
IPIIPI00024053   IPI00935193   IPI00514747   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2J2
IntAct (EBI)Q9P2J2
FunCoupENSG00000085552
BioGRIDIGSF9
STRING (EMBL)IGSF9
ZODIACIGSF9
Ontologies - Pathways
QuickGOQ9P2J2
Ontology : AmiGOplasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  dendrite development  cell junction  axon  dendrite  regulation of synapse organization  inhibitory synapse  protein binding involved in cell-cell adhesion  
Ontology : EGO-EBIplasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  dendrite development  cell junction  axon  dendrite  regulation of synapse organization  inhibitory synapse  protein binding involved in cell-cell adhesion  
NDEx NetworkIGSF9
Atlas of Cancer Signalling NetworkIGSF9
Wikipedia pathwaysIGSF9
Orthology - Evolution
OrthoDB57549
GeneTree (enSembl)ENSG00000085552
Phylogenetic Trees/Animal Genes : TreeFamIGSF9
HOVERGENQ9P2J2
HOGENOMQ9P2J2
Homologs : HomoloGeneIGSF9
Homology/Alignments : Family Browser (UCSC)IGSF9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGSF9
dbVarIGSF9
ClinVarIGSF9
1000_GenomesIGSF9 
Exome Variant ServerIGSF9
ExAC (Exome Aggregation Consortium)IGSF9 (select the gene name)
Genetic variants : HAPMAP57549
Genomic Variants (DGV)IGSF9 [DGVbeta]
DECIPHERIGSF9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGSF9 
Mutations
ICGC Data PortalIGSF9 
TCGA Data PortalIGSF9 
Broad Tumor PortalIGSF9
OASIS PortalIGSF9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGSF9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGSF9
DgiDB (Drug Gene Interaction Database)IGSF9
DoCM (Curated mutations)IGSF9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGSF9 (select a term)
intoGenIGSF9
Cancer3DIGSF9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609738   
Orphanet
MedgenIGSF9
Genetic Testing Registry IGSF9
NextProtQ9P2J2 [Medical]
TSGene57549
GENETestsIGSF9
Target ValidationIGSF9
Huge Navigator IGSF9 [HugePedia]
snp3D : Map Gene to Disease57549
BioCentury BCIQIGSF9
ClinGenIGSF9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57549
Chemical/Pharm GKB GenePA38508
Clinical trialIGSF9
Miscellaneous
canSAR (ICR)IGSF9 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGSF9
EVEXIGSF9
GoPubMedIGSF9
iHOPIGSF9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:08 CEST 2017

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