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IGSF9B (-)

Identity

Alias_namesMIR4697 host gene (non-protein coding)
Alias_symbol (synonym)LINC00947
LOC283174
Other alias-
HGNC (Hugo) -
LocusID (NCBI) 283174
Atlas_Id 56749
Location -  [Link to chromosome band ]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IGSF9B (11q25) / ARHGEF10L (1p36.13)SNAP25 (20p12.2) / IGSF9B (11q25)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)IGSF9B  283174  -
Aliases
GeneCards (Weizmann)IGSF9B
Ensembl hg19 (Hinxton)ENSG00000280237 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280237 [Gene_View]  ENSG00000280237 [Sequence]  - [Contig_View]  IGSF9B [Vega]
ICGC DataPortalENSG00000280237
TCGA cBioPortalIGSF9B
AceView (NCBI)IGSF9B
Genatlas (Paris)IGSF9B
WikiGenes283174
SOURCE (Princeton)IGSF9B
Genetics Home Reference (NIH)IGSF9B
Genomic and cartography
GoldenPath hg38 (UCSC)IGSF9B  -  
GoldenPath hg19 (UCSC)IGSF9B  -  
GoldenPathIGSF9B - [CytoView hg19]  IGSF9B - [CytoView hg38]
ImmunoBaseENSG00000280237
Mapping of homologs : NCBIIGSF9B [Mapview hg19]  IGSF9B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGSF9B
Alternative Splicing GalleryENSG00000280237
Gene ExpressionIGSF9B [ NCBI-GEO ]   IGSF9B [ EBI - ARRAY_EXPRESS ]   IGSF9B [ SEEK ]   IGSF9B [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283174
GTEX Portal (Tissue expression)IGSF9B
Human Protein AtlasENSG00000280237-IGSF9B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPX0
Splice isoforms : SwissVarQ9UPX0
PhosPhoSitePlusQ9UPX0
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    FN3_sf    Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  
Conserved Domain (NCBI)IGSF9B
DMDM Disease mutations283174
Blocks (Seattle)IGSF9B
SuperfamilyQ9UPX0
Human Protein Atlas [tissue]ENSG00000280237-IGSF9B [tissue]
Peptide AtlasQ9UPX0
Protein Interaction databases
DIP (DOE-UCLA)Q9UPX0
IntAct (EBI)Q9UPX0
FunCoupENSG00000280237
BioGRIDIGSF9B
STRING (EMBL)IGSF9B
ZODIACIGSF9B
Ontologies - Pathways
QuickGOQ9UPX0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkIGSF9B
Atlas of Cancer Signalling NetworkIGSF9B
Wikipedia pathwaysIGSF9B
Orthology - Evolution
OrthoDB283174
GeneTree (enSembl)ENSG00000280237
Phylogenetic Trees/Animal Genes : TreeFam-
HOGENOMQ9UPX0
Homologs : HomoloGeneIGSF9B
Homology/Alignments : Family Browser (UCSC)IGSF9B
Gene fusions - Rearrangements
Fusion : QuiverIGSF9B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGSF9B
dbVarIGSF9B
ClinVarIGSF9B
1000_GenomesIGSF9B 
Exome Variant ServerIGSF9B
ExAC (Exome Aggregation Consortium)ENSG00000280237
GNOMAD BrowserENSG00000280237
Varsome BrowserIGSF9B
Genetic variants : HAPMAP283174
Genomic Variants (DGV)IGSF9B [DGVbeta]
DECIPHERIGSF9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGSF9B 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF9B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DIGSF9B
Mutations and Diseases : HGMD-
BioMutasearch IGSF9B
DgiDB (Drug Gene Interaction Database)IGSF9B
DoCM (Curated mutations)IGSF9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGSF9B (select a term)
intoGenIGSF9B
Cancer3DIGSF9B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETIGSF9B
MedgenIGSF9B
Genetic Testing Registry IGSF9B
NextProtQ9UPX0 [Medical]
TSGene283174
GENETestsIGSF9B
Target ValidationIGSF9B
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease283174
BioCentury BCIQIGSF9B
ClinGenIGSF9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283174
Clinical trialIGSF9B
Miscellaneous
canSAR (ICR)IGSF9B (select the gene name)
HarmonizomeIGSF9B
DataMed IndexIGSF9B
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGSF9B
EVEXIGSF9B
GoPubMedIGSF9B
iHOPIGSF9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 10 12:18:29 CEST 2020

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