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IGSF9B (immunoglobulin superfamily member 9B)

Identity

Alias_namesimmunoglobulin superfamily, member 9B
Alias_symbol (synonym)KIAA1030
Other alias-
HGNC (Hugo) IGSF9B
LocusID (NCBI) 22997
Atlas_Id 64584
Location 11q25  [Link to chromosome band 11q25]
Location_base_pair Starts at 133908625 and ends at 133956754 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IGSF9B (11q25) / ARHGEF10L (1p36.13)SNAP25 (20p12.2) / IGSF9B (11q25)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IGSF9B   32326
Cards
Entrez_Gene (NCBI)IGSF9B  22997  immunoglobulin superfamily member 9B
Aliases
GeneCards (Weizmann)IGSF9B
Ensembl hg19 (Hinxton)ENSG00000080854 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000080854 [Gene_View]  chr11:133908625-133956754 [Contig_View]  IGSF9B [Vega]
ICGC DataPortalENSG00000080854
TCGA cBioPortalIGSF9B
AceView (NCBI)IGSF9B
Genatlas (Paris)IGSF9B
WikiGenes22997
SOURCE (Princeton)IGSF9B
Genetics Home Reference (NIH)IGSF9B
Genomic and cartography
GoldenPath hg38 (UCSC)IGSF9B  -     chr11:133908625-133956754 -  11q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IGSF9B  -     11q25   [Description]    (hg19-Feb_2009)
EnsemblIGSF9B - 11q25 [CytoView hg19]  IGSF9B - 11q25 [CytoView hg38]
Mapping of homologs : NCBIIGSF9B [Mapview hg19]  IGSF9B [Mapview hg38]
OMIM613773   
Gene and transcription
Genbank (Entrez)AB028953 AB231704 AI208637 AK097578 AY358228
RefSeq transcript (Entrez)NM_001277285 NM_014987
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IGSF9B
Cluster EST : UnigeneHs.440476 [ NCBI ]
CGAP (NCI)Hs.440476
Alternative Splicing GalleryENSG00000080854
Gene ExpressionIGSF9B [ NCBI-GEO ]   IGSF9B [ EBI - ARRAY_EXPRESS ]   IGSF9B [ SEEK ]   IGSF9B [ MEM ]
Gene Expression Viewer (FireBrowse)IGSF9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22997
GTEX Portal (Tissue expression)IGSF9B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPX0
Splice isoforms : SwissVarQ9UPX0
PhosPhoSitePlusQ9UPX0
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  
Conserved Domain (NCBI)IGSF9B
DMDM Disease mutations22997
Blocks (Seattle)IGSF9B
SuperfamilyQ9UPX0
Human Protein AtlasENSG00000080854
Peptide AtlasQ9UPX0
IPIIPI00847471   IPI00432700   IPI00983208   IPI00784613   IPI00977894   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPX0
IntAct (EBI)Q9UPX0
FunCoupENSG00000080854
BioGRIDIGSF9B
STRING (EMBL)IGSF9B
ZODIACIGSF9B
Ontologies - Pathways
QuickGOQ9UPX0
Ontology : AmiGOhomophilic cell adhesion via plasma membrane adhesion molecules  nervous system development  postsynaptic density  integral component of membrane  kinase binding  cell junction  dendrite  neuronal cell body  postsynaptic membrane  inhibitory synapse  positive regulation of inhibitory postsynaptic potential  
Ontology : EGO-EBIhomophilic cell adhesion via plasma membrane adhesion molecules  nervous system development  postsynaptic density  integral component of membrane  kinase binding  cell junction  dendrite  neuronal cell body  postsynaptic membrane  inhibitory synapse  positive regulation of inhibitory postsynaptic potential  
NDEx NetworkIGSF9B
Atlas of Cancer Signalling NetworkIGSF9B
Wikipedia pathwaysIGSF9B
Orthology - Evolution
OrthoDB22997
GeneTree (enSembl)ENSG00000080854
Phylogenetic Trees/Animal Genes : TreeFamIGSF9B
HOVERGENQ9UPX0
HOGENOMQ9UPX0
Homologs : HomoloGeneIGSF9B
Homology/Alignments : Family Browser (UCSC)IGSF9B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIGSF9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IGSF9B
dbVarIGSF9B
ClinVarIGSF9B
1000_GenomesIGSF9B 
Exome Variant ServerIGSF9B
ExAC (Exome Aggregation Consortium)IGSF9B (select the gene name)
Genetic variants : HAPMAP22997
Genomic Variants (DGV)IGSF9B [DGVbeta]
DECIPHERIGSF9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIGSF9B 
Mutations
ICGC Data PortalIGSF9B 
TCGA Data PortalIGSF9B 
Broad Tumor PortalIGSF9B
OASIS PortalIGSF9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIGSF9B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIGSF9B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IGSF9B
DgiDB (Drug Gene Interaction Database)IGSF9B
DoCM (Curated mutations)IGSF9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IGSF9B (select a term)
intoGenIGSF9B
Cancer3DIGSF9B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613773   
Orphanet
MedgenIGSF9B
Genetic Testing Registry IGSF9B
NextProtQ9UPX0 [Medical]
TSGene22997
GENETestsIGSF9B
Target ValidationIGSF9B
Huge Navigator IGSF9B [HugePedia]
snp3D : Map Gene to Disease22997
BioCentury BCIQIGSF9B
ClinGenIGSF9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22997
Chemical/Pharm GKB GenePA142671660
Clinical trialIGSF9B
Miscellaneous
canSAR (ICR)IGSF9B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIGSF9B
EVEXIGSF9B
GoPubMedIGSF9B
iHOPIGSF9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:23 CEST 2017

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