Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IL13RA1 (interleukin 13 receptor subunit alpha 1)

Identity

Alias_namesinterleukin 13 receptor
Alias_symbol (synonym)IL-13Ra
NR4
CD213a1
Other aliasCD213A1
CT19
HGNC (Hugo) IL13RA1
LocusID (NCBI) 3597
Atlas_Id 53486
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 118727596 and ends at 118794533 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IL13RA1 (Xq24) / DOCK11 (Xq24)IL13RA1 (Xq24) / NUCKS1 (1q32.1)IL13RA1 (Xq24) / SERPINE2 (2q36.1)
IL13RA1 (Xq24) / WDR44 (Xq24)LOC100507246 () / IL13RA1 (Xq24)IL13RA1 Xq24 / DOCK11 Xq24
IL13RA1 Xq24 / WDR44 Xq24

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IL13RA1   5974
Cards
Entrez_Gene (NCBI)IL13RA1  3597  interleukin 13 receptor subunit alpha 1
AliasesCD213A1; CT19; IL-13Ra; NR4
GeneCards (Weizmann)IL13RA1
Ensembl hg19 (Hinxton)ENSG00000131724 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131724 [Gene_View]  chrX:118727596-118794533 [Contig_View]  IL13RA1 [Vega]
ICGC DataPortalENSG00000131724
TCGA cBioPortalIL13RA1
AceView (NCBI)IL13RA1
Genatlas (Paris)IL13RA1
WikiGenes3597
SOURCE (Princeton)IL13RA1
Genetics Home Reference (NIH)IL13RA1
Genomic and cartography
GoldenPath hg38 (UCSC)IL13RA1  -     chrX:118727596-118794533 +  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IL13RA1  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblIL13RA1 - Xq24 [CytoView hg19]  IL13RA1 - Xq24 [CytoView hg38]
Mapping of homologs : NCBIIL13RA1 [Mapview hg19]  IL13RA1 [Mapview hg38]
OMIM300119   
Gene and transcription
Genbank (Entrez)AB209849 AK123515 AK296958 AK313467 BC009960
RefSeq transcript (Entrez)NM_001560
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IL13RA1
Cluster EST : UnigeneHs.496646 [ NCBI ]
CGAP (NCI)Hs.496646
Alternative Splicing GalleryENSG00000131724
Gene ExpressionIL13RA1 [ NCBI-GEO ]   IL13RA1 [ EBI - ARRAY_EXPRESS ]   IL13RA1 [ SEEK ]   IL13RA1 [ MEM ]
Gene Expression Viewer (FireBrowse)IL13RA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3597
GTEX Portal (Tissue expression)IL13RA1
Human Protein AtlasENSG00000131724-IL13RA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78552   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78552  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78552
Splice isoforms : SwissVarP78552
PhosPhoSitePlusP78552
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    HEMATOPO_REC_S_F2 (PS01356)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold    Short_hematopoietin_rcpt_2_CS    TypeI_recpt_CBD   
Domain families : Pfam (Sanger)IL6Ra-bind (PF09240)   
Domain families : Pfam (NCBI)pfam09240   
Conserved Domain (NCBI)IL13RA1
DMDM Disease mutations3597
Blocks (Seattle)IL13RA1
PDB (SRS)3BPN    3BPO    4HWB    5E4E   
PDB (PDBSum)3BPN    3BPO    4HWB    5E4E   
PDB (IMB)3BPN    3BPO    4HWB    5E4E   
PDB (RSDB)3BPN    3BPO    4HWB    5E4E   
Structural Biology KnowledgeBase3BPN    3BPO    4HWB    5E4E   
SCOP (Structural Classification of Proteins)3BPN    3BPO    4HWB    5E4E   
CATH (Classification of proteins structures)3BPN    3BPO    4HWB    5E4E   
SuperfamilyP78552
Human Protein Atlas [tissue]ENSG00000131724-IL13RA1 [tissue]
Peptide AtlasP78552
HPRD02125
IPIIPI00020354   IPI00843983   IPI00647552   
Protein Interaction databases
DIP (DOE-UCLA)P78552
IntAct (EBI)P78552
FunCoupENSG00000131724
BioGRIDIL13RA1
STRING (EMBL)IL13RA1
ZODIACIL13RA1
Ontologies - Pathways
QuickGOP78552
Ontology : AmiGOcytokine receptor activity  protein binding  plasma membrane  interleukin-13 receptor complex  cell surface receptor signaling pathway  cytokine-mediated signaling pathway  
Ontology : EGO-EBIcytokine receptor activity  protein binding  plasma membrane  interleukin-13 receptor complex  cell surface receptor signaling pathway  cytokine-mediated signaling pathway  
Pathways : KEGGCytokine-cytokine receptor interaction    Jak-STAT signaling pathway   
NDEx NetworkIL13RA1
Atlas of Cancer Signalling NetworkIL13RA1
Wikipedia pathwaysIL13RA1
Orthology - Evolution
OrthoDB3597
GeneTree (enSembl)ENSG00000131724
Phylogenetic Trees/Animal Genes : TreeFamIL13RA1
HOVERGENP78552
HOGENOMP78552
Homologs : HomoloGeneIL13RA1
Homology/Alignments : Family Browser (UCSC)IL13RA1
Gene fusions - Rearrangements
Fusion: TCGA_MDACCIL13RA1 Xq24 DOCK11 Xq24 PRAD
Fusion: TCGA_MDACCIL13RA1 Xq24 WDR44 Xq24 LUAD
Tumor Fusion PortalIL13RA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIL13RA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IL13RA1
dbVarIL13RA1
ClinVarIL13RA1
1000_GenomesIL13RA1 
Exome Variant ServerIL13RA1
ExAC (Exome Aggregation Consortium)ENSG00000131724
GNOMAD BrowserENSG00000131724
Genetic variants : HAPMAP3597
Genomic Variants (DGV)IL13RA1 [DGVbeta]
DECIPHERIL13RA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIL13RA1 
Mutations
ICGC Data PortalIL13RA1 
TCGA Data PortalIL13RA1 
Broad Tumor PortalIL13RA1
OASIS PortalIL13RA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIL13RA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIL13RA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch IL13RA1
DgiDB (Drug Gene Interaction Database)IL13RA1
DoCM (Curated mutations)IL13RA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IL13RA1 (select a term)
intoGenIL13RA1
Cancer3DIL13RA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300119   
Orphanet
DisGeNETIL13RA1
MedgenIL13RA1
Genetic Testing Registry IL13RA1
NextProtP78552 [Medical]
TSGene3597
GENETestsIL13RA1
Target ValidationIL13RA1
Huge Navigator IL13RA1 [HugePedia]
snp3D : Map Gene to Disease3597
BioCentury BCIQIL13RA1
ClinGenIL13RA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3597
Chemical/Pharm GKB GenePA200
Clinical trialIL13RA1
Miscellaneous
canSAR (ICR)IL13RA1 (select the gene name)
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIL13RA1
EVEXIL13RA1
GoPubMedIL13RA1
iHOPIL13RA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:17:36 CET 2017

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