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IL17B (interleukin 17B)

Identity

Alias_symbol (synonym)IL-17B
ZCYTO7
IL-20
MGC138900
MGC138901
NIRF
Other alias
HGNC (Hugo) IL17B
LocusID (NCBI) 27190
Atlas_Id 54833
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 148753830 and ends at 148783765 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IL17B   5982
Cards
Entrez_Gene (NCBI)IL17B  27190  interleukin 17B
AliasesIL-17B; IL-20; NIRF; ZCYTO7
GeneCards (Weizmann)IL17B
Ensembl hg19 (Hinxton)ENSG00000127743 [Gene_View]  chr5:148753830-148783765 [Contig_View]  IL17B [Vega]
Ensembl hg38 (Hinxton)ENSG00000127743 [Gene_View]  chr5:148753830-148783765 [Contig_View]  IL17B [Vega]
ICGC DataPortalENSG00000127743
TCGA cBioPortalIL17B
AceView (NCBI)IL17B
Genatlas (Paris)IL17B
WikiGenes27190
SOURCE (Princeton)IL17B
Genetics Home Reference (NIH)IL17B
Genomic and cartography
GoldenPath hg19 (UCSC)IL17B  -     chr5:148753830-148783765 -  5q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IL17B  -     5q32   [Description]    (hg38-Dec_2013)
EnsemblIL17B - 5q32 [CytoView hg19]  IL17B - 5q32 [CytoView hg38]
Mapping of homologs : NCBIIL17B [Mapview hg19]  IL17B [Mapview hg38]
OMIM604627   
Gene and transcription
Genbank (Entrez)AF110385 AF152098 AF184969 AF212311 AF218727
RefSeq transcript (Entrez)NM_001317987 NM_014443
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)IL17B
Cluster EST : UnigeneHs.156979 [ NCBI ]
CGAP (NCI)Hs.156979
Alternative Splicing GalleryENSG00000127743
Gene ExpressionIL17B [ NCBI-GEO ]   IL17B [ EBI - ARRAY_EXPRESS ]   IL17B [ SEEK ]   IL17B [ MEM ]
Gene Expression Viewer (FireBrowse)IL17B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27190
GTEX Portal (Tissue expression)IL17B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHF5
Splice isoforms : SwissVarQ9UHF5
PhosPhoSitePlusQ9UHF5
Domains : Interpro (EBI)Cystine-knot_cytokine    IL-17_chr    IL-17_fam   
Domain families : Pfam (Sanger)IL17 (PF06083)   
Domain families : Pfam (NCBI)pfam06083   
Conserved Domain (NCBI)IL17B
DMDM Disease mutations27190
Blocks (Seattle)IL17B
SuperfamilyQ9UHF5
Human Protein AtlasENSG00000127743
Peptide AtlasQ9UHF5
HPRD05217
IPIIPI00004387   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHF5
IntAct (EBI)Q9UHF5
FunCoupENSG00000127743
BioGRIDIL17B
STRING (EMBL)IL17B
ZODIACIL17B
Ontologies - Pathways
QuickGOQ9UHF5
Ontology : AmiGOcytokine activity  cytokine receptor binding  extracellular space  inflammatory response  immune response  cell surface receptor signaling pathway  cell-cell signaling  positive regulation of cytokine production involved in inflammatory response  
Ontology : EGO-EBIcytokine activity  cytokine receptor binding  extracellular space  inflammatory response  immune response  cell surface receptor signaling pathway  cell-cell signaling  positive regulation of cytokine production involved in inflammatory response  
Pathways : KEGGCytokine-cytokine receptor interaction   
NDEx NetworkIL17B
Atlas of Cancer Signalling NetworkIL17B
Wikipedia pathwaysIL17B
Orthology - Evolution
OrthoDB27190
GeneTree (enSembl)ENSG00000127743
Phylogenetic Trees/Animal Genes : TreeFamIL17B
HOVERGENQ9UHF5
HOGENOMQ9UHF5
Homologs : HomoloGeneIL17B
Homology/Alignments : Family Browser (UCSC)IL17B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIL17B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IL17B
dbVarIL17B
ClinVarIL17B
1000_GenomesIL17B 
Exome Variant ServerIL17B
ExAC (Exome Aggregation Consortium)IL17B (select the gene name)
Genetic variants : HAPMAP27190
Genomic Variants (DGV)IL17B [DGVbeta]
DECIPHER (Syndromes)5:148753830-148783765  ENSG00000127743
CONAN: Copy Number AnalysisIL17B 
Mutations
ICGC Data PortalIL17B 
TCGA Data PortalIL17B 
Broad Tumor PortalIL17B
OASIS PortalIL17B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIL17B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIL17B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IL17B
DgiDB (Drug Gene Interaction Database)IL17B
DoCM (Curated mutations)IL17B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IL17B (select a term)
intoGenIL17B
Cancer3DIL17B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604627   
Orphanet
MedgenIL17B
Genetic Testing Registry IL17B
NextProtQ9UHF5 [Medical]
TSGene27190
GENETestsIL17B
Huge Navigator IL17B [HugePedia]
snp3D : Map Gene to Disease27190
BioCentury BCIQIL17B
ClinGenIL17B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27190
Chemical/Pharm GKB GenePA29795
Clinical trialIL17B
Miscellaneous
canSAR (ICR)IL17B (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIL17B
EVEXIL17B
GoPubMedIL17B
iHOPIL17B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:05:02 CEST 2017

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