Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IL17RD (interleukin 17 receptor D)

Identity

Alias_symbol (synonym)SEF
IL17RLM
FLJ35755
IL-17RD
Other aliasHH18
HGNC (Hugo) IL17RD
LocusID (NCBI) 54756
Atlas_Id 46556
Location 3p14.3  [Link to chromosome band 3p14]
Location_base_pair Starts at 57124010 and ends at 57204345 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IL17RD (3p14.3) / CTNNA1 (5q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IL17RD   17616
Cards
Entrez_Gene (NCBI)IL17RD  54756  interleukin 17 receptor D
AliasesHH18; IL-17RD; IL17RLM; SEF
GeneCards (Weizmann)IL17RD
Ensembl hg19 (Hinxton)ENSG00000144730 [Gene_View]  chr3:57124010-57204345 [Contig_View]  IL17RD [Vega]
Ensembl hg38 (Hinxton)ENSG00000144730 [Gene_View]  chr3:57124010-57204345 [Contig_View]  IL17RD [Vega]
ICGC DataPortalENSG00000144730
TCGA cBioPortalIL17RD
AceView (NCBI)IL17RD
Genatlas (Paris)IL17RD
WikiGenes54756
SOURCE (Princeton)IL17RD
Genetics Home Reference (NIH)IL17RD
Genomic and cartography
GoldenPath hg19 (UCSC)IL17RD  -     chr3:57124010-57204345 -  3p14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IL17RD  -     3p14.3   [Description]    (hg38-Dec_2013)
EnsemblIL17RD - 3p14.3 [CytoView hg19]  IL17RD - 3p14.3 [CytoView hg38]
Mapping of homologs : NCBIIL17RD [Mapview hg19]  IL17RD [Mapview hg38]
OMIM606807   615267   
Gene and transcription
Genbank (Entrez)AF458067 AF494208 AF494211 AK001251 AK092579
RefSeq transcript (Entrez)NM_001318864 NM_017563
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)IL17RD
Cluster EST : UnigeneHs.150725 [ NCBI ]
CGAP (NCI)Hs.150725
Alternative Splicing GalleryENSG00000144730
Gene ExpressionIL17RD [ NCBI-GEO ]   IL17RD [ EBI - ARRAY_EXPRESS ]   IL17RD [ SEEK ]   IL17RD [ MEM ]
Gene Expression Viewer (FireBrowse)IL17RD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54756
GTEX Portal (Tissue expression)IL17RD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFM7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFM7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFM7
Splice isoforms : SwissVarQ8NFM7
PhosPhoSitePlusQ8NFM7
Domaine pattern : Prosite (Expaxy)SEFIR (PS51534)   
Domains : Interpro (EBI)IL17R_D_N    SEFIR_dom    TIR_dom   
Domain families : Pfam (Sanger)IL17R_D_N (PF16742)    SEFIR (PF08357)   
Domain families : Pfam (NCBI)pfam16742    pfam08357   
Conserved Domain (NCBI)IL17RD
DMDM Disease mutations54756
Blocks (Seattle)IL17RD
SuperfamilyQ8NFM7
Human Protein AtlasENSG00000144730
Peptide AtlasQ8NFM7
IPIIPI00641705   IPI00395790   IPI00640049   IPI00302984   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFM7
IntAct (EBI)Q8NFM7
FunCoupENSG00000144730
BioGRIDIL17RD
STRING (EMBL)IL17RD
ZODIACIL17RD
Ontologies - Pathways
QuickGOQ8NFM7
Ontology : AmiGOGolgi membrane  MAPK cascade  nucleoplasm  Golgi apparatus  integral component of plasma membrane  cytokine-mediated signaling pathway  interleukin-17 receptor activity  
Ontology : EGO-EBIGolgi membrane  MAPK cascade  nucleoplasm  Golgi apparatus  integral component of plasma membrane  cytokine-mediated signaling pathway  interleukin-17 receptor activity  
NDEx NetworkIL17RD
Atlas of Cancer Signalling NetworkIL17RD
Wikipedia pathwaysIL17RD
Orthology - Evolution
OrthoDB54756
GeneTree (enSembl)ENSG00000144730
Phylogenetic Trees/Animal Genes : TreeFamIL17RD
HOVERGENQ8NFM7
HOGENOMQ8NFM7
Homologs : HomoloGeneIL17RD
Homology/Alignments : Family Browser (UCSC)IL17RD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIL17RD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IL17RD
dbVarIL17RD
ClinVarIL17RD
1000_GenomesIL17RD 
Exome Variant ServerIL17RD
ExAC (Exome Aggregation Consortium)IL17RD (select the gene name)
Genetic variants : HAPMAP54756
Genomic Variants (DGV)IL17RD [DGVbeta]
DECIPHER (Syndromes)3:57124010-57204345  ENSG00000144730
CONAN: Copy Number AnalysisIL17RD 
Mutations
ICGC Data PortalIL17RD 
TCGA Data PortalIL17RD 
Broad Tumor PortalIL17RD
OASIS PortalIL17RD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIL17RD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIL17RD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IL17RD
DgiDB (Drug Gene Interaction Database)IL17RD
DoCM (Curated mutations)IL17RD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IL17RD (select a term)
intoGenIL17RD
Cancer3DIL17RD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606807    615267   
Orphanet3249   
MedgenIL17RD
Genetic Testing Registry IL17RD
NextProtQ8NFM7 [Medical]
TSGene54756
GENETestsIL17RD
Huge Navigator IL17RD [HugePedia]
snp3D : Map Gene to Disease54756
BioCentury BCIQIL17RD
ClinGenIL17RD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54756
Chemical/Pharm GKB GenePA134993407
Clinical trialIL17RD
Miscellaneous
canSAR (ICR)IL17RD (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIL17RD
EVEXIL17RD
GoPubMedIL17RD
iHOPIL17RD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:10:37 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.