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IL17RE (interleukin 17 receptor E)

Identity

Alias_symbol (synonym)FLJ23658
Other alias-
HGNC (Hugo) IL17RE
LocusID (NCBI) 132014
Atlas_Id 64589
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 9902828 and ends at 9916400 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IL17RE   18439
Cards
Entrez_Gene (NCBI)IL17RE  132014  interleukin 17 receptor E
Aliases
GeneCards (Weizmann)IL17RE
Ensembl hg19 (Hinxton)ENSG00000163701 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163701 [Gene_View]  chr3:9902828-9916400 [Contig_View]  IL17RE [Vega]
ICGC DataPortalENSG00000163701
TCGA cBioPortalIL17RE
AceView (NCBI)IL17RE
Genatlas (Paris)IL17RE
WikiGenes132014
SOURCE (Princeton)IL17RE
Genetics Home Reference (NIH)IL17RE
Genomic and cartography
GoldenPath hg38 (UCSC)IL17RE  -     chr3:9902828-9916400 +  3p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IL17RE  -     3p25.3   [Description]    (hg19-Feb_2009)
EnsemblIL17RE - 3p25.3 [CytoView hg19]  IL17RE - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBIIL17RE [Mapview hg19]  IL17RE [Mapview hg38]
OMIM614995   
Gene and transcription
Genbank (Entrez)AF458069 AK074238 AK096793 AK096801 AK297697
RefSeq transcript (Entrez)NM_001193380 NM_144640 NM_153480 NM_153481 NM_153483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IL17RE
Cluster EST : UnigeneHs.390823 [ NCBI ]
CGAP (NCI)Hs.390823
Alternative Splicing GalleryENSG00000163701
Gene ExpressionIL17RE [ NCBI-GEO ]   IL17RE [ EBI - ARRAY_EXPRESS ]   IL17RE [ SEEK ]   IL17RE [ MEM ]
Gene Expression Viewer (FireBrowse)IL17RE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132014
GTEX Portal (Tissue expression)IL17RE
Human Protein AtlasENSG00000163701-IL17RE [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFR9
Splice isoforms : SwissVarQ8NFR9
PhosPhoSitePlusQ8NFR9
Domaine pattern : Prosite (Expaxy)SEFIR (PS51534)   
Domains : Interpro (EBI)IL-17_rcpt_C/E_N    SEFIR_dom   
Domain families : Pfam (Sanger)IL17_R_N (PF15037)    SEFIR (PF08357)   
Domain families : Pfam (NCBI)pfam15037    pfam08357   
Conserved Domain (NCBI)IL17RE
DMDM Disease mutations132014
Blocks (Seattle)IL17RE
SuperfamilyQ8NFR9
Human Protein Atlas [tissue]ENSG00000163701-IL17RE [tissue]
Peptide AtlasQ8NFR9
HPRD17143
IPIIPI00168887   IPI00789075   IPI00177866   IPI00971039   IPI00876915   IPI00911082   IPI00927002   IPI00926793   IPI00927281   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFR9
IntAct (EBI)Q8NFR9
FunCoupENSG00000163701
BioGRIDIL17RE
STRING (EMBL)IL17RE
ZODIACIL17RE
Ontologies - Pathways
QuickGOQ8NFR9
Ontology : AmiGOprotein binding  extracellular region  cytoplasm  plasma membrane  integral component of plasma membrane  inflammatory response  cytokine-mediated signaling pathway  interleukin-17 receptor activity  
Ontology : EGO-EBIprotein binding  extracellular region  cytoplasm  plasma membrane  integral component of plasma membrane  inflammatory response  cytokine-mediated signaling pathway  interleukin-17 receptor activity  
NDEx NetworkIL17RE
Atlas of Cancer Signalling NetworkIL17RE
Wikipedia pathwaysIL17RE
Orthology - Evolution
OrthoDB132014
GeneTree (enSembl)ENSG00000163701
Phylogenetic Trees/Animal Genes : TreeFamIL17RE
HOVERGENQ8NFR9
HOGENOMQ8NFR9
Homologs : HomoloGeneIL17RE
Homology/Alignments : Family Browser (UCSC)IL17RE
Gene fusions - Rearrangements
Tumor Fusion PortalIL17RE
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIL17RE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IL17RE
dbVarIL17RE
ClinVarIL17RE
1000_GenomesIL17RE 
Exome Variant ServerIL17RE
ExAC (Exome Aggregation Consortium)ENSG00000163701
GNOMAD BrowserENSG00000163701
Genetic variants : HAPMAP132014
Genomic Variants (DGV)IL17RE [DGVbeta]
DECIPHERIL17RE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIL17RE 
Mutations
ICGC Data PortalIL17RE 
TCGA Data PortalIL17RE 
Broad Tumor PortalIL17RE
OASIS PortalIL17RE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIL17RE  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIL17RE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IL17RE
DgiDB (Drug Gene Interaction Database)IL17RE
DoCM (Curated mutations)IL17RE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IL17RE (select a term)
intoGenIL17RE
Cancer3DIL17RE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614995   
Orphanet
DisGeNETIL17RE
MedgenIL17RE
Genetic Testing Registry IL17RE
NextProtQ8NFR9 [Medical]
TSGene132014
GENETestsIL17RE
Target ValidationIL17RE
Huge Navigator IL17RE [HugePedia]
snp3D : Map Gene to Disease132014
BioCentury BCIQIL17RE
ClinGenIL17RE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132014
Chemical/Pharm GKB GenePA134896136
Clinical trialIL17RE
Miscellaneous
canSAR (ICR)IL17RE (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIL17RE
EVEXIL17RE
GoPubMedIL17RE
iHOPIL17RE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:07:41 CET 2017

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