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IL1F10 (interleukin 1 family member 10 (theta))

Identity

Alias_namesinterleukin 1 family, member 10 (theta)
Alias_symbol (synonym)FKSG75
IL-1HY2
IL-1F10
IL1-theta
MGC11983
MGC119832
MGC119833
Other aliasFIL1-theta
IL-38
IL1HY2
HGNC (Hugo) IL1F10
LocusID (NCBI) 84639
Atlas_Id 64592
Location 2q14.1  [Link to chromosome band 2q14]
Location_base_pair Starts at 113072318 and ends at 113075850 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IL1F10   15552
Cards
Entrez_Gene (NCBI)IL1F10  84639  interleukin 1 family member 10 (theta)
AliasesFIL1-theta; FKSG75; IL-1HY2; IL-38; 
IL1-theta; IL1HY2
GeneCards (Weizmann)IL1F10
Ensembl hg19 (Hinxton)ENSG00000136697 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136697 [Gene_View]  chr2:113072318-113075850 [Contig_View]  IL1F10 [Vega]
ICGC DataPortalENSG00000136697
TCGA cBioPortalIL1F10
AceView (NCBI)IL1F10
Genatlas (Paris)IL1F10
WikiGenes84639
SOURCE (Princeton)IL1F10
Genetics Home Reference (NIH)IL1F10
Genomic and cartography
GoldenPath hg38 (UCSC)IL1F10  -     chr2:113072318-113075850 +  2q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IL1F10  -     2q14.1   [Description]    (hg19-Feb_2009)
EnsemblIL1F10 - 2q14.1 [CytoView hg19]  IL1F10 - 2q14.1 [CytoView hg38]
Mapping of homologs : NCBIIL1F10 [Mapview hg19]  IL1F10 [Mapview hg38]
OMIM615296   
Gene and transcription
Genbank (Entrez)AF334755 AY026753 AY029413 AY358846 BC103966
RefSeq transcript (Entrez)NM_032556 NM_173161
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IL1F10
Cluster EST : UnigeneHs.306974 [ NCBI ]
CGAP (NCI)Hs.306974
Alternative Splicing GalleryENSG00000136697
Gene ExpressionIL1F10 [ NCBI-GEO ]   IL1F10 [ EBI - ARRAY_EXPRESS ]   IL1F10 [ SEEK ]   IL1F10 [ MEM ]
Gene Expression Viewer (FireBrowse)IL1F10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84639
GTEX Portal (Tissue expression)IL1F10
Human Protein AtlasENSG00000136697-IL1F10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWZ1
Splice isoforms : SwissVarQ8WWZ1
PhosPhoSitePlusQ8WWZ1
Domains : Interpro (EBI)IL-1_F10    IL-1_fam    IL-1RA/IL-36    IL1/FGF   
Domain families : Pfam (Sanger)IL1 (PF00340)   
Domain families : Pfam (NCBI)pfam00340   
Conserved Domain (NCBI)IL1F10
DMDM Disease mutations84639
Blocks (Seattle)IL1F10
PDB (SRS)5BOW   
PDB (PDBSum)5BOW   
PDB (IMB)5BOW   
PDB (RSDB)5BOW   
Structural Biology KnowledgeBase5BOW   
SCOP (Structural Classification of Proteins)5BOW   
CATH (Classification of proteins structures)5BOW   
SuperfamilyQ8WWZ1
Human Protein Atlas [tissue]ENSG00000136697-IL1F10 [tissue]
Peptide AtlasQ8WWZ1
HPRD17144
IPIIPI00103482   IPI00220411   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWZ1
IntAct (EBI)Q8WWZ1
FunCoupENSG00000136697
BioGRIDIL1F10
STRING (EMBL)IL1F10
ZODIACIL1F10
Ontologies - Pathways
QuickGOQ8WWZ1
Ontology : AmiGOcytokine activity  interleukin-1 receptor binding  extracellular space  inflammatory response  immune response  cytokine-mediated signaling pathway  
Ontology : EGO-EBIcytokine activity  interleukin-1 receptor binding  extracellular space  inflammatory response  immune response  cytokine-mediated signaling pathway  
NDEx NetworkIL1F10
Atlas of Cancer Signalling NetworkIL1F10
Wikipedia pathwaysIL1F10
Orthology - Evolution
OrthoDB84639
GeneTree (enSembl)ENSG00000136697
Phylogenetic Trees/Animal Genes : TreeFamIL1F10
HOVERGENQ8WWZ1
HOGENOMQ8WWZ1
Homologs : HomoloGeneIL1F10
Homology/Alignments : Family Browser (UCSC)IL1F10
Gene fusions - Rearrangements
Tumor Fusion PortalIL1F10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIL1F10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IL1F10
dbVarIL1F10
ClinVarIL1F10
1000_GenomesIL1F10 
Exome Variant ServerIL1F10
ExAC (Exome Aggregation Consortium)ENSG00000136697
GNOMAD BrowserENSG00000136697
Genetic variants : HAPMAP84639
Genomic Variants (DGV)IL1F10 [DGVbeta]
DECIPHERIL1F10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIL1F10 
Mutations
ICGC Data PortalIL1F10 
TCGA Data PortalIL1F10 
Broad Tumor PortalIL1F10
OASIS PortalIL1F10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIL1F10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIL1F10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IL1F10
DgiDB (Drug Gene Interaction Database)IL1F10
DoCM (Curated mutations)IL1F10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IL1F10 (select a term)
intoGenIL1F10
Cancer3DIL1F10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615296   
Orphanet
DisGeNETIL1F10
MedgenIL1F10
Genetic Testing Registry IL1F10
NextProtQ8WWZ1 [Medical]
TSGene84639
GENETestsIL1F10
Target ValidationIL1F10
Huge Navigator IL1F10 [HugePedia]
snp3D : Map Gene to Disease84639
BioCentury BCIQIL1F10
ClinGenIL1F10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84639
Chemical/Pharm GKB GenePA38387
Clinical trialIL1F10
Miscellaneous
canSAR (ICR)IL1F10 (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIL1F10
EVEXIL1F10
GoPubMedIL1F10
iHOPIL1F10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:04:45 CET 2017

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