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IL1RAPL2 (interleukin 1 receptor accessory protein like 2)

Identity

Alias_symbol (synonym)IL-1R9
TIGIRR-1
IL1RAPL-2
IL1R9
Other alias
HGNC (Hugo) IL1RAPL2
LocusID (NCBI) 26280
Atlas_Id 64593
Location Xq22.3  [Link to chromosome band Xq22]
Location_base_pair Starts at 104566315 and ends at 105767829 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IL1RAPL2   5997
Cards
Entrez_Gene (NCBI)IL1RAPL2  26280  interleukin 1 receptor accessory protein like 2
AliasesIL-1R9; IL1R9; IL1RAPL-2; TIGIRR-1
GeneCards (Weizmann)IL1RAPL2
Ensembl hg19 (Hinxton)ENSG00000189108 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189108 [Gene_View]  chrX:104566315-105767829 [Contig_View]  IL1RAPL2 [Vega]
ICGC DataPortalENSG00000189108
TCGA cBioPortalIL1RAPL2
AceView (NCBI)IL1RAPL2
Genatlas (Paris)IL1RAPL2
WikiGenes26280
SOURCE (Princeton)IL1RAPL2
Genetics Home Reference (NIH)IL1RAPL2
Genomic and cartography
GoldenPath hg38 (UCSC)IL1RAPL2  -     chrX:104566315-105767829 +  Xq22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IL1RAPL2  -     Xq22.3   [Description]    (hg19-Feb_2009)
EnsemblIL1RAPL2 - Xq22.3 [CytoView hg19]  IL1RAPL2 - Xq22.3 [CytoView hg38]
Mapping of homologs : NCBIIL1RAPL2 [Mapview hg19]  IL1RAPL2 [Mapview hg38]
OMIM300277   
Gene and transcription
Genbank (Entrez)AF181285 AF212016 AF284436 AJ272208 AJ290436
RefSeq transcript (Entrez)NM_017416
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IL1RAPL2
Cluster EST : UnigeneHs.675519 [ NCBI ]
CGAP (NCI)Hs.675519
Alternative Splicing GalleryENSG00000189108
Gene ExpressionIL1RAPL2 [ NCBI-GEO ]   IL1RAPL2 [ EBI - ARRAY_EXPRESS ]   IL1RAPL2 [ SEEK ]   IL1RAPL2 [ MEM ]
Gene Expression Viewer (FireBrowse)IL1RAPL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26280
GTEX Portal (Tissue expression)IL1RAPL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP60   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP60  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP60
Splice isoforms : SwissVarQ9NP60
PhosPhoSitePlusQ9NP60
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    TIR (PS50104)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    IL-1_rcpt_fam    IL-1_rcpt_II-typ    Immunoglobulin    TIR_dom   
Domain families : Pfam (Sanger)ig (PF00047)    Ig_2 (PF13895)    TIR (PF01582)   
Domain families : Pfam (NCBI)pfam00047    pfam13895    pfam01582   
Domain families : Smart (EMBL)IG (SM00409)  TIR (SM00255)  
Conserved Domain (NCBI)IL1RAPL2
DMDM Disease mutations26280
Blocks (Seattle)IL1RAPL2
SuperfamilyQ9NP60
Human Protein AtlasENSG00000189108
Peptide AtlasQ9NP60
HPRD02231
IPIIPI00010099   IPI01015649   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP60
IntAct (EBI)Q9NP60
FunCoupENSG00000189108
BioGRIDIL1RAPL2
STRING (EMBL)IL1RAPL2
ZODIACIL1RAPL2
Ontologies - Pathways
QuickGOQ9NP60
Ontology : AmiGOinterleukin-1 receptor activity  interleukin-1, Type II, blocking receptor activity  central nervous system development  integral component of membrane  cytokine-mediated signaling pathway  
Ontology : EGO-EBIinterleukin-1 receptor activity  interleukin-1, Type II, blocking receptor activity  central nervous system development  integral component of membrane  cytokine-mediated signaling pathway  
NDEx NetworkIL1RAPL2
Atlas of Cancer Signalling NetworkIL1RAPL2
Wikipedia pathwaysIL1RAPL2
Orthology - Evolution
OrthoDB26280
GeneTree (enSembl)ENSG00000189108
Phylogenetic Trees/Animal Genes : TreeFamIL1RAPL2
HOVERGENQ9NP60
HOGENOMQ9NP60
Homologs : HomoloGeneIL1RAPL2
Homology/Alignments : Family Browser (UCSC)IL1RAPL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIL1RAPL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IL1RAPL2
dbVarIL1RAPL2
ClinVarIL1RAPL2
1000_GenomesIL1RAPL2 
Exome Variant ServerIL1RAPL2
ExAC (Exome Aggregation Consortium)IL1RAPL2 (select the gene name)
Genetic variants : HAPMAP26280
Genomic Variants (DGV)IL1RAPL2 [DGVbeta]
DECIPHERIL1RAPL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIL1RAPL2 
Mutations
ICGC Data PortalIL1RAPL2 
TCGA Data PortalIL1RAPL2 
Broad Tumor PortalIL1RAPL2
OASIS PortalIL1RAPL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIL1RAPL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIL1RAPL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch IL1RAPL2
DgiDB (Drug Gene Interaction Database)IL1RAPL2
DoCM (Curated mutations)IL1RAPL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IL1RAPL2 (select a term)
intoGenIL1RAPL2
Cancer3DIL1RAPL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300277   
Orphanet
MedgenIL1RAPL2
Genetic Testing Registry IL1RAPL2
NextProtQ9NP60 [Medical]
TSGene26280
GENETestsIL1RAPL2
Target ValidationIL1RAPL2
Huge Navigator IL1RAPL2 [HugePedia]
snp3D : Map Gene to Disease26280
BioCentury BCIQIL1RAPL2
ClinGenIL1RAPL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26280
Chemical/Pharm GKB GenePA29813
Clinical trialIL1RAPL2
Miscellaneous
canSAR (ICR)IL1RAPL2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIL1RAPL2
EVEXIL1RAPL2
GoPubMedIL1RAPL2
iHOPIL1RAPL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:10 CEST 2017

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