Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IL20 (interleukin 20)

Identity

Alias_symbol (synonym)ZCYTO10
IL10D
IL-20
Other alias
HGNC (Hugo) IL20
LocusID (NCBI) 50604
Atlas_Id 46098
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 206865809 and ends at 206869223 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IL20   6002
Cards
Entrez_Gene (NCBI)IL20  50604  interleukin 20
AliasesIL-20; IL10D; ZCYTO10
GeneCards (Weizmann)IL20
Ensembl hg19 (Hinxton)ENSG00000162891 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162891 [Gene_View]  chr1:206865809-206869223 [Contig_View]  IL20 [Vega]
ICGC DataPortalENSG00000162891
TCGA cBioPortalIL20
AceView (NCBI)IL20
Genatlas (Paris)IL20
WikiGenes50604
SOURCE (Princeton)IL20
Genetics Home Reference (NIH)IL20
Genomic and cartography
GoldenPath hg38 (UCSC)IL20  -     chr1:206865809-206869223 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IL20  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblIL20 - 1q32.1 [CytoView hg19]  IL20 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIIL20 [Mapview hg19]  IL20 [Mapview hg38]
OMIM605619   
Gene and transcription
Genbank (Entrez)AF224266 AY358320 AY876922 BC069311 BC069364
RefSeq transcript (Entrez)NM_018724
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IL20
Cluster EST : UnigeneHs.272373 [ NCBI ]
CGAP (NCI)Hs.272373
Alternative Splicing GalleryENSG00000162891
Gene ExpressionIL20 [ NCBI-GEO ]   IL20 [ EBI - ARRAY_EXPRESS ]   IL20 [ SEEK ]   IL20 [ MEM ]
Gene Expression Viewer (FireBrowse)IL20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50604
GTEX Portal (Tissue expression)IL20
Human Protein AtlasENSG00000162891-IL20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYY1
Splice isoforms : SwissVarQ9NYY1
PhosPhoSitePlusQ9NYY1
Domaine pattern : Prosite (Expaxy)INTERLEUKIN_10 (PS00520)   
Domains : Interpro (EBI)4_helix_cytokine-like_core    4_helix_cytokine_core    IL-10/19/20/22/24/26_fam    IL-10_CS    IL-20   
Domain families : Pfam (Sanger)IL10 (PF00726)   
Domain families : Pfam (NCBI)pfam00726   
Domain families : Smart (EMBL)IL10 (SM00188)  
Conserved Domain (NCBI)IL20
DMDM Disease mutations50604
Blocks (Seattle)IL20
PDB (SRS)4DOH   
PDB (PDBSum)4DOH   
PDB (IMB)4DOH   
PDB (RSDB)4DOH   
Structural Biology KnowledgeBase4DOH   
SCOP (Structural Classification of Proteins)4DOH   
CATH (Classification of proteins structures)4DOH   
SuperfamilyQ9NYY1
Human Protein Atlas [tissue]ENSG00000162891-IL20 [tissue]
Peptide AtlasQ9NYY1
HPRD05728
IPIIPI00000048   IPI00719795   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYY1
IntAct (EBI)Q9NYY1
FunCoupENSG00000162891
BioGRIDIL20
STRING (EMBL)IL20
ZODIACIL20
Ontologies - Pathways
QuickGOQ9NYY1
Ontology : AmiGOcytokine activity  extracellular region  extracellular space  interleukin-20 receptor binding  interleukin-22 receptor binding  positive regulation of epidermal cell differentiation  positive regulation of keratinocyte differentiation  positive regulation of osteoclast differentiation  regulation of inflammatory response  
Ontology : EGO-EBIcytokine activity  extracellular region  extracellular space  interleukin-20 receptor binding  interleukin-22 receptor binding  positive regulation of epidermal cell differentiation  positive regulation of keratinocyte differentiation  positive regulation of osteoclast differentiation  regulation of inflammatory response  
Pathways : KEGGCytokine-cytokine receptor interaction    Jak-STAT signaling pathway   
NDEx NetworkIL20
Atlas of Cancer Signalling NetworkIL20
Wikipedia pathwaysIL20
Orthology - Evolution
OrthoDB50604
GeneTree (enSembl)ENSG00000162891
Phylogenetic Trees/Animal Genes : TreeFamIL20
HOVERGENQ9NYY1
HOGENOMQ9NYY1
Homologs : HomoloGeneIL20
Homology/Alignments : Family Browser (UCSC)IL20
Gene fusions - Rearrangements
Tumor Fusion PortalIL20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIL20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IL20
dbVarIL20
ClinVarIL20
1000_GenomesIL20 
Exome Variant ServerIL20
ExAC (Exome Aggregation Consortium)ENSG00000162891
GNOMAD BrowserENSG00000162891
Genetic variants : HAPMAP50604
Genomic Variants (DGV)IL20 [DGVbeta]
DECIPHERIL20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIL20 
Mutations
ICGC Data PortalIL20 
TCGA Data PortalIL20 
Broad Tumor PortalIL20
OASIS PortalIL20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIL20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIL20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IL20
DgiDB (Drug Gene Interaction Database)IL20
DoCM (Curated mutations)IL20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IL20 (select a term)
intoGenIL20
Cancer3DIL20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605619   
Orphanet
DisGeNETIL20
MedgenIL20
Genetic Testing Registry IL20
NextProtQ9NYY1 [Medical]
TSGene50604
GENETestsIL20
Target ValidationIL20
Huge Navigator IL20 [HugePedia]
snp3D : Map Gene to Disease50604
BioCentury BCIQIL20
ClinGenIL20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50604
Chemical/Pharm GKB GenePA29817
Clinical trialIL20
Miscellaneous
canSAR (ICR)IL20 (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIL20
EVEXIL20
GoPubMedIL20
iHOPIL20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:17:41 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Xo2tal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.