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IL20RA (interleukin 20 receptor subunit alpha)

Identity

Alias_namesinterleukin 20 receptor, alpha
interleukin 20 receptor alpha subunit
Alias_symbol (synonym)ZCYTOR7
IL-20R1
Other aliasCRF2-8
IL-20R-alpha
IL-20RA
HGNC (Hugo) IL20RA
LocusID (NCBI) 53832
Atlas_Id 51317
Location 6q23.3  [Link to chromosome band 6q23]
Location_base_pair Starts at 136999971 and ends at 137045180 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IL20RA (6q23.3) / ATP6V0E2 (7q36.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IL20RA   6003
Cards
Entrez_Gene (NCBI)IL20RA  53832  interleukin 20 receptor subunit alpha
AliasesCRF2-8; IL-20R-alpha; IL-20R1; IL-20RA
GeneCards (Weizmann)IL20RA
Ensembl hg19 (Hinxton)ENSG00000016402 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000016402 [Gene_View]  ENSG00000016402 [Sequence]  chr6:136999971-137045180 [Contig_View]  IL20RA [Vega]
ICGC DataPortalENSG00000016402
TCGA cBioPortalIL20RA
AceView (NCBI)IL20RA
Genatlas (Paris)IL20RA
WikiGenes53832
SOURCE (Princeton)IL20RA
Genetics Home Reference (NIH)IL20RA
Genomic and cartography
GoldenPath hg38 (UCSC)IL20RA  -     chr6:136999971-137045180 -  6q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IL20RA  -     6q23.3   [Description]    (hg19-Feb_2009)
EnsemblIL20RA - 6q23.3 [CytoView hg19]  IL20RA - 6q23.3 [CytoView hg38]
Mapping of homologs : NCBIIL20RA [Mapview hg19]  IL20RA [Mapview hg38]
OMIM605620   
Gene and transcription
Genbank (Entrez)AF184971 AJ420490 AK098312 AK297121 AK307072
RefSeq transcript (Entrez)NM_001278722 NM_001278723 NM_001278724 NM_014432
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IL20RA
Cluster EST : UnigeneHs.445868 [ NCBI ]
CGAP (NCI)Hs.445868
Alternative Splicing GalleryENSG00000016402
Gene ExpressionIL20RA [ NCBI-GEO ]   IL20RA [ EBI - ARRAY_EXPRESS ]   IL20RA [ SEEK ]   IL20RA [ MEM ]
Gene Expression Viewer (FireBrowse)IL20RA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53832
GTEX Portal (Tissue expression)IL20RA
Human Protein AtlasENSG00000016402-IL20RA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHF4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHF4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHF4
Splice isoforms : SwissVarQ9UHF4
PhosPhoSitePlusQ9UHF4
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    FN3_sf    Ig-like_fold    IL-20_rcpt_alpha    Interferon/interleukin_rcp_dom   
Domain families : Pfam (Sanger)Interfer-bind (PF09294)    Tissue_fac (PF01108)   
Domain families : Pfam (NCBI)pfam09294    pfam01108   
Conserved Domain (NCBI)IL20RA
DMDM Disease mutations53832
Blocks (Seattle)IL20RA
PDB (SRS)4DOH   
PDB (PDBSum)4DOH   
PDB (IMB)4DOH   
PDB (RSDB)4DOH   
Structural Biology KnowledgeBase4DOH   
SCOP (Structural Classification of Proteins)4DOH   
CATH (Classification of proteins structures)4DOH   
SuperfamilyQ9UHF4
Human Protein Atlas [tissue]ENSG00000016402-IL20RA [tissue]
Peptide AtlasQ9UHF4
HPRD05729
IPIIPI00004366   IPI00454990   IPI01013072   IPI00382781   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHF4
IntAct (EBI)Q9UHF4
FunCoupENSG00000016402
BioGRIDIL20RA
STRING (EMBL)IL20RA
ZODIACIL20RA
Ontologies - Pathways
QuickGOQ9UHF4
Ontology : AmiGOprotein binding  plasma membrane  plasma membrane  integral component of membrane  cytokine-mediated signaling pathway  cytokine-mediated signaling pathway  interleukin-20 binding  regulation of bone resorption  positive regulation of intrinsic apoptotic signaling pathway  
Ontology : EGO-EBIprotein binding  plasma membrane  plasma membrane  integral component of membrane  cytokine-mediated signaling pathway  cytokine-mediated signaling pathway  interleukin-20 binding  regulation of bone resorption  positive regulation of intrinsic apoptotic signaling pathway  
Pathways : KEGGCytokine-cytokine receptor interaction    Jak-STAT signaling pathway   
NDEx NetworkIL20RA
Atlas of Cancer Signalling NetworkIL20RA
Wikipedia pathwaysIL20RA
Orthology - Evolution
OrthoDB53832
GeneTree (enSembl)ENSG00000016402
Phylogenetic Trees/Animal Genes : TreeFamIL20RA
HOVERGENQ9UHF4
HOGENOMQ9UHF4
Homologs : HomoloGeneIL20RA
Homology/Alignments : Family Browser (UCSC)IL20RA
Gene fusions - Rearrangements
Fusion : QuiverIL20RA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIL20RA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IL20RA
dbVarIL20RA
ClinVarIL20RA
1000_GenomesIL20RA 
Exome Variant ServerIL20RA
ExAC (Exome Aggregation Consortium)ENSG00000016402
GNOMAD BrowserENSG00000016402
Varsome BrowserIL20RA
Genetic variants : HAPMAP53832
Genomic Variants (DGV)IL20RA [DGVbeta]
DECIPHERIL20RA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIL20RA 
Mutations
ICGC Data PortalIL20RA 
TCGA Data PortalIL20RA 
Broad Tumor PortalIL20RA
OASIS PortalIL20RA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIL20RA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIL20RA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IL20RA
DgiDB (Drug Gene Interaction Database)IL20RA
DoCM (Curated mutations)IL20RA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IL20RA (select a term)
intoGenIL20RA
Cancer3DIL20RA(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605620   
Orphanet
DisGeNETIL20RA
MedgenIL20RA
Genetic Testing Registry IL20RA
NextProtQ9UHF4 [Medical]
TSGene53832
GENETestsIL20RA
Target ValidationIL20RA
Huge Navigator IL20RA [HugePedia]
snp3D : Map Gene to Disease53832
BioCentury BCIQIL20RA
ClinGenIL20RA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53832
Chemical/Pharm GKB GenePA29818
Clinical trialIL20RA
Miscellaneous
canSAR (ICR)IL20RA (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIL20RA
EVEXIL20RA
GoPubMedIL20RA
iHOPIL20RA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:13:16 CET 2018

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