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IL36A (interleukin 36, alpha)

Identity

Alias_namesIL1F6
interleukin 1 family
Alias_symbol (synonym)FIL1
FIL1E
IL-1F6
IL1(EPSILON)
MGC129553
MGC129552
Other aliasFIL1(EPSILON)
HGNC (Hugo) IL36A
LocusID (NCBI) 27179
Atlas_Id 53685
Location 2q14.1  [Link to chromosome band 2q14]
Location_base_pair Starts at 113005461 and ends at 113008044 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IL36A   15562
Cards
Entrez_Gene (NCBI)IL36A  27179  interleukin 36, alpha
AliasesFIL1; FIL1(EPSILON); FIL1E; IL-1F6; 
IL1(EPSILON); IL1F6
GeneCards (Weizmann)IL36A
Ensembl hg19 (Hinxton)ENSG00000136694 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136694 [Gene_View]  chr2:113005461-113008044 [Contig_View]  IL36A [Vega]
ICGC DataPortalENSG00000136694
TCGA cBioPortalIL36A
AceView (NCBI)IL36A
Genatlas (Paris)IL36A
WikiGenes27179
SOURCE (Princeton)IL36A
Genetics Home Reference (NIH)IL36A
Genomic and cartography
GoldenPath hg38 (UCSC)IL36A  -     chr2:113005461-113008044 +  2q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IL36A  -     2q14.1   [Description]    (hg19-Feb_2009)
EnsemblIL36A - 2q14.1 [CytoView hg19]  IL36A - 2q14.1 [CytoView hg38]
Mapping of homologs : NCBIIL36A [Mapview hg19]  IL36A [Mapview hg38]
OMIM605509   
Gene and transcription
Genbank (Entrez)AF201831 AK314149 BC107042 BC107043
RefSeq transcript (Entrez)NM_014440
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IL36A
Cluster EST : UnigeneHs.278910 [ NCBI ]
CGAP (NCI)Hs.278910
Alternative Splicing GalleryENSG00000136694
Gene ExpressionIL36A [ NCBI-GEO ]   IL36A [ EBI - ARRAY_EXPRESS ]   IL36A [ SEEK ]   IL36A [ MEM ]
Gene Expression Viewer (FireBrowse)IL36A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27179
GTEX Portal (Tissue expression)IL36A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHA7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHA7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHA7
Splice isoforms : SwissVarQ9UHA7
PhosPhoSitePlusQ9UHA7
Domains : Interpro (EBI)IL-1_fam    IL-36_alpha    IL1/FGF   
Domain families : Pfam (Sanger)IL1 (PF00340)   
Domain families : Pfam (NCBI)pfam00340   
Conserved Domain (NCBI)IL36A
DMDM Disease mutations27179
Blocks (Seattle)IL36A
SuperfamilyQ9UHA7
Human Protein AtlasENSG00000136694
Peptide AtlasQ9UHA7
HPRD16113
IPIIPI00004382   IPI00871636   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHA7
IntAct (EBI)Q9UHA7
FunCoupENSG00000136694
BioGRIDIL36A
STRING (EMBL)IL36A
ZODIACIL36A
Ontologies - Pathways
QuickGOQ9UHA7
Ontology : AmiGOcytokine activity  interleukin-1 receptor binding  interleukin-1 receptor binding  extracellular region  extracellular region  extracellular space  inflammatory response  immune response  cytokine-mediated signaling pathway  positive regulation of interleukin-6 production  innate immune response  
Ontology : EGO-EBIcytokine activity  interleukin-1 receptor binding  interleukin-1 receptor binding  extracellular region  extracellular region  extracellular space  inflammatory response  immune response  cytokine-mediated signaling pathway  positive regulation of interleukin-6 production  innate immune response  
NDEx NetworkIL36A
Atlas of Cancer Signalling NetworkIL36A
Wikipedia pathwaysIL36A
Orthology - Evolution
OrthoDB27179
GeneTree (enSembl)ENSG00000136694
Phylogenetic Trees/Animal Genes : TreeFamIL36A
HOVERGENQ9UHA7
HOGENOMQ9UHA7
Homologs : HomoloGeneIL36A
Homology/Alignments : Family Browser (UCSC)IL36A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIL36A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IL36A
dbVarIL36A
ClinVarIL36A
1000_GenomesIL36A 
Exome Variant ServerIL36A
ExAC (Exome Aggregation Consortium)IL36A (select the gene name)
Genetic variants : HAPMAP27179
Genomic Variants (DGV)IL36A [DGVbeta]
DECIPHERIL36A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIL36A 
Mutations
ICGC Data PortalIL36A 
TCGA Data PortalIL36A 
Broad Tumor PortalIL36A
OASIS PortalIL36A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIL36A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIL36A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IL36A
DgiDB (Drug Gene Interaction Database)IL36A
DoCM (Curated mutations)IL36A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IL36A (select a term)
intoGenIL36A
Cancer3DIL36A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605509   
Orphanet
MedgenIL36A
Genetic Testing Registry IL36A
NextProtQ9UHA7 [Medical]
TSGene27179
GENETestsIL36A
Huge Navigator IL36A [HugePedia]
snp3D : Map Gene to Disease27179
BioCentury BCIQIL36A
ClinGenIL36A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27179
Chemical/Pharm GKB GenePA38389
Clinical trialIL36A
Miscellaneous
canSAR (ICR)IL36A (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIL36A
EVEXIL36A
GoPubMedIL36A
iHOPIL36A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:20:24 CEST 2017

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