Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IL4 (interleukin 4)

Identity

Alias_symbol (synonym)BSF1
IL-4
BCGF1
BCGF-1
MGC79402
Other aliasBSF-1
HGNC (Hugo) IL4
LocusID (NCBI) 3565
Atlas_Id 40960
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 132673986 and ends at 132682678 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)IL4   6014
Cards
Entrez_Gene (NCBI)IL4  3565  interleukin 4
AliasesBCGF-1; BCGF1; BSF-1; BSF1; 
IL-4
GeneCards (Weizmann)IL4
Ensembl hg19 (Hinxton)ENSG00000113520 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113520 [Gene_View]  chr5:132673986-132682678 [Contig_View]  IL4 [Vega]
ICGC DataPortalENSG00000113520
TCGA cBioPortalIL4
AceView (NCBI)IL4
Genatlas (Paris)IL4
WikiGenes3565
SOURCE (Princeton)IL4
Genetics Home Reference (NIH)IL4
Genomic and cartography
GoldenPath hg38 (UCSC)IL4  -     chr5:132673986-132682678 +  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IL4  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblIL4 - 5q31.1 [CytoView hg19]  IL4 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBIIL4 [Mapview hg19]  IL4 [Mapview hg38]
OMIM147780   
Gene and transcription
Genbank (Entrez)AB102862 AF043336 AM937235 BC066277 BC066278
RefSeq transcript (Entrez)NM_000589 NM_172348
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IL4
Cluster EST : UnigeneHs.73917 [ NCBI ]
CGAP (NCI)Hs.73917
Alternative Splicing GalleryENSG00000113520
Gene ExpressionIL4 [ NCBI-GEO ]   IL4 [ EBI - ARRAY_EXPRESS ]   IL4 [ SEEK ]   IL4 [ MEM ]
Gene Expression Viewer (FireBrowse)IL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3565
GTEX Portal (Tissue expression)IL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05112   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP05112  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05112
Splice isoforms : SwissVarP05112
PhosPhoSitePlusP05112
Domaine pattern : Prosite (Expaxy)INTERLEUKIN_4_13 (PS00838)   
Domains : Interpro (EBI)4_helix_cytokine-like_core    4_helix_cytokine_core    IL-4    IL-4/IL-13    IL-4/IL-13_CS   
Domain families : Pfam (Sanger)IL4 (PF00727)   
Domain families : Pfam (NCBI)pfam00727   
Domain families : Smart (EMBL)IL4_13 (SM00190)  
Conserved Domain (NCBI)IL4
DMDM Disease mutations3565
Blocks (Seattle)IL4
PDB (SRS)1BBN    1BCN    1CYL    1HIJ    1HIK    1HZI    1IAR    1ILL    1ITE    1ITI    1ITL    1ITM    1RCB    2B8U    2B8X    2B8Y    2B8Z    2B90    2B91    2CYK    2D48    2INT    3BPL    3BPN    3QB7    4YDY    5FHX   
PDB (PDBSum)1BBN    1BCN    1CYL    1HIJ    1HIK    1HZI    1IAR    1ILL    1ITE    1ITI    1ITL    1ITM    1RCB    2B8U    2B8X    2B8Y    2B8Z    2B90    2B91    2CYK    2D48    2INT    3BPL    3BPN    3QB7    4YDY    5FHX   
PDB (IMB)1BBN    1BCN    1CYL    1HIJ    1HIK    1HZI    1IAR    1ILL    1ITE    1ITI    1ITL    1ITM    1RCB    2B8U    2B8X    2B8Y    2B8Z    2B90    2B91    2CYK    2D48    2INT    3BPL    3BPN    3QB7    4YDY    5FHX   
PDB (RSDB)1BBN    1BCN    1CYL    1HIJ    1HIK    1HZI    1IAR    1ILL    1ITE    1ITI    1ITL    1ITM    1RCB    2B8U    2B8X    2B8Y    2B8Z    2B90    2B91    2CYK    2D48    2INT    3BPL    3BPN    3QB7    4YDY    5FHX   
Structural Biology KnowledgeBase1BBN    1BCN    1CYL    1HIJ    1HIK    1HZI    1IAR    1ILL    1ITE    1ITI    1ITL    1ITM    1RCB    2B8U    2B8X    2B8Y    2B8Z    2B90    2B91    2CYK    2D48    2INT    3BPL    3BPN    3QB7    4YDY    5FHX   
SCOP (Structural Classification of Proteins)1BBN    1BCN    1CYL    1HIJ    1HIK    1HZI    1IAR    1ILL    1ITE    1ITI    1ITL    1ITM    1RCB    2B8U    2B8X    2B8Y    2B8Z    2B90    2B91    2CYK    2D48    2INT    3BPL    3BPN    3QB7    4YDY    5FHX   
CATH (Classification of proteins structures)1BBN    1BCN    1CYL    1HIJ    1HIK    1HZI    1IAR    1ILL    1ITE    1ITI    1ITL    1ITM    1RCB    2B8U    2B8X    2B8Y    2B8Z    2B90    2B91    2CYK    2D48    2INT    3BPL    3BPN    3QB7    4YDY    5FHX   
SuperfamilyP05112
Human Protein AtlasENSG00000113520
Peptide AtlasP05112
HPRD00989
IPIIPI00007081   IPI00217945   
Protein Interaction databases
DIP (DOE-UCLA)P05112
IntAct (EBI)P05112
FunCoupENSG00000113520
BioGRIDIL4
STRING (EMBL)IL4
ZODIACIL4
Ontologies - Pathways
QuickGOP05112
Ontology : AmiGOmicroglial cell activation  innate immune response in mucosa  positive regulation of defense response to virus by host  T-helper 1 cell lineage commitment  negative regulation of acute inflammatory response  negative regulation of chronic inflammatory response  cytokine activity  interleukin-4 receptor binding  protein binding  extracellular region  extracellular space  chemotaxis  immune response  cellular defense response  female pregnancy  response to nutrient  growth factor activity  cholesterol metabolic process  external side of plasma membrane  regulation of proton transport  negative regulation of epithelial cell migration  response to organic cyclic compound  B cell differentiation  positive regulation of B cell proliferation  B cell costimulation  positive regulation of interleukin-10 production  positive regulation of interleukin-13 production  response to cytokine  T-helper 2 cell cytokine production  type 2 immune response  positive regulation of T cell proliferation  positive regulation of activated T cell proliferation  regulation of phosphorylation  response to drug  defense response to protozoan  myeloid dendritic cell differentiation  negative regulation of macrophage activation  negative regulation of apoptotic process  positive regulation of mast cell degranulation  negative regulation of nitric oxide biosynthetic process  T-helper 2 cell differentiation  positive regulation of chemokine biosynthetic process  connective tissue growth factor biosynthetic process  regulation of isotype switching  positive regulation of MHC class II biosynthetic process  response to ethanol  positive regulation of T cell differentiation  negative regulation of osteoclast differentiation  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  positive regulation of isotype switching to IgE isotypes  positive regulation of isotype switching to IgG isotypes  regulation of immune response  positive regulation of sequence-specific DNA binding transcription factor activity  retina development in camera-type eye  negative regulation of white fat cell proliferation  cellular response to mercury ion  positive regulation of mononuclear cell migration  dendritic cell differentiation  extrinsic apoptotic signaling pathway in absence of ligand  positive regulation of myoblast fusion  positive regulation of reactive oxygen species biosynthetic process  negative regulation of complement-dependent cytotoxicity  negative regulation of T-helper 17 cell differentiation  negative regulation of endothelial cell apoptotic process  positive regulation of eosinophil chemotaxis  negative regulation of extrinsic apoptotic signaling pathway  
Ontology : EGO-EBImicroglial cell activation  innate immune response in mucosa  positive regulation of defense response to virus by host  T-helper 1 cell lineage commitment  negative regulation of acute inflammatory response  negative regulation of chronic inflammatory response  cytokine activity  interleukin-4 receptor binding  protein binding  extracellular region  extracellular space  chemotaxis  immune response  cellular defense response  female pregnancy  response to nutrient  growth factor activity  cholesterol metabolic process  external side of plasma membrane  regulation of proton transport  negative regulation of epithelial cell migration  response to organic cyclic compound  B cell differentiation  positive regulation of B cell proliferation  B cell costimulation  positive regulation of interleukin-10 production  positive regulation of interleukin-13 production  response to cytokine  T-helper 2 cell cytokine production  type 2 immune response  positive regulation of T cell proliferation  positive regulation of activated T cell proliferation  regulation of phosphorylation  response to drug  defense response to protozoan  myeloid dendritic cell differentiation  negative regulation of macrophage activation  negative regulation of apoptotic process  positive regulation of mast cell degranulation  negative regulation of nitric oxide biosynthetic process  T-helper 2 cell differentiation  positive regulation of chemokine biosynthetic process  connective tissue growth factor biosynthetic process  regulation of isotype switching  positive regulation of MHC class II biosynthetic process  response to ethanol  positive regulation of T cell differentiation  negative regulation of osteoclast differentiation  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  positive regulation of isotype switching to IgE isotypes  positive regulation of isotype switching to IgG isotypes  regulation of immune response  positive regulation of sequence-specific DNA binding transcription factor activity  retina development in camera-type eye  negative regulation of white fat cell proliferation  cellular response to mercury ion  positive regulation of mononuclear cell migration  dendritic cell differentiation  extrinsic apoptotic signaling pathway in absence of ligand  positive regulation of myoblast fusion  positive regulation of reactive oxygen species biosynthetic process  negative regulation of complement-dependent cytotoxicity  negative regulation of T-helper 17 cell differentiation  negative regulation of endothelial cell apoptotic process  positive regulation of eosinophil chemotaxis  negative regulation of extrinsic apoptotic signaling pathway  
Pathways : BIOCARTA [Genes]   
Pathways : KEGG   
NDEx NetworkIL4
Atlas of Cancer Signalling NetworkIL4
Wikipedia pathwaysIL4
Orthology - Evolution
OrthoDB3565
GeneTree (enSembl)ENSG00000113520
Phylogenetic Trees/Animal Genes : TreeFamIL4
HOVERGENP05112
HOGENOMP05112
Homologs : HomoloGeneIL4
Homology/Alignments : Family Browser (UCSC)IL4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IL4
dbVarIL4
ClinVarIL4
1000_GenomesIL4 
Exome Variant ServerIL4
ExAC (Exome Aggregation Consortium)IL4 (select the gene name)
Genetic variants : HAPMAP3565
Genomic Variants (DGV)IL4 [DGVbeta]
DECIPHERIL4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIL4 
Mutations
ICGC Data PortalIL4 
TCGA Data PortalIL4 
Broad Tumor PortalIL4
OASIS PortalIL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)TBsLVD Tuberculosis susceptibility Locus Variation Database
BioMutasearch IL4
DgiDB (Drug Gene Interaction Database)IL4
DoCM (Curated mutations)IL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IL4 (select a term)
intoGenIL4
Cancer3DIL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147780   
Orphanet
MedgenIL4
Genetic Testing Registry IL4
NextProtP05112 [Medical]
TSGene3565
GENETestsIL4
Target ValidationIL4
Huge Navigator IL4 [HugePedia]
snp3D : Map Gene to Disease3565
BioCentury BCIQIL4
ClinGenIL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3565
Chemical/Pharm GKB GenePA197
Clinical trialIL4
Miscellaneous
canSAR (ICR)IL4 (select the gene name)
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIL4
EVEXIL4
GoPubMedIL4
iHOPIL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:13:15 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.