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IL9 (interleukin 9)

Identity

Alias_symbol (synonym)IL-9
HP40
P40
Other alias
HGNC (Hugo) IL9
LocusID (NCBI) 3578
Atlas_Id 40968
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 135892246 and ends at 135895827 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HBS1L (6q23.3) / IL9 (5q31.1)HBS1L 6q23.3 / IL9 5q31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IL9   6029
Cards
Entrez_Gene (NCBI)IL9  3578  interleukin 9
AliasesHP40; IL-9; P40
GeneCards (Weizmann)IL9
Ensembl hg19 (Hinxton)ENSG00000145839 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145839 [Gene_View]  chr5:135892246-135895827 [Contig_View]  IL9 [Vega]
ICGC DataPortalENSG00000145839
TCGA cBioPortalIL9
AceView (NCBI)IL9
Genatlas (Paris)IL9
WikiGenes3578
SOURCE (Princeton)IL9
Genetics Home Reference (NIH)IL9
Genomic and cartography
GoldenPath hg38 (UCSC)IL9  -     chr5:135892246-135895827 -  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IL9  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblIL9 - 5q31.1 [CytoView hg19]  IL9 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBIIL9 [Mapview hg19]  IL9 [Mapview hg38]
OMIM146931   
Gene and transcription
Genbank (Entrez)BC066283 BC066284 BC066285 BC066286 BC066287
RefSeq transcript (Entrez)NM_000590
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IL9
Cluster EST : UnigeneHs.960 [ NCBI ]
CGAP (NCI)Hs.960
Alternative Splicing GalleryENSG00000145839
Gene ExpressionIL9 [ NCBI-GEO ]   IL9 [ EBI - ARRAY_EXPRESS ]   IL9 [ SEEK ]   IL9 [ MEM ]
Gene Expression Viewer (FireBrowse)IL9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3578
GTEX Portal (Tissue expression)IL9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15248   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP15248  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15248
Splice isoforms : SwissVarP15248
PhosPhoSitePlusP15248
Domaine pattern : Prosite (Expaxy)INTERLEUKIN_7_9 (PS00255)   
Domains : Interpro (EBI)IL-7/IL-9_CS    IL-7/IL-9_fam    IL-9   
Domain families : Pfam (Sanger)IL7 (PF01415)   
Domain families : Pfam (NCBI)pfam01415   
Domain structure : Prodom (Prabi Lyon)PD033324 (PD033324)   
Conserved Domain (NCBI)IL9
DMDM Disease mutations3578
Blocks (Seattle)IL9
SuperfamilyP15248
Human Protein AtlasENSG00000145839
Peptide AtlasP15248
HPRD00910
IPIIPI00010780   
Protein Interaction databases
DIP (DOE-UCLA)P15248
IntAct (EBI)P15248
FunCoupENSG00000145839
BioGRIDIL9
STRING (EMBL)IL9
ZODIACIL9
Ontologies - Pathways
QuickGOP15248
Ontology : AmiGOcytokine activity  interleukin-9 receptor binding  extracellular region  extracellular space  inflammatory response  immune response  growth factor activity  positive regulation of cell proliferation  positive regulation of cell growth  positive regulation of interleukin-5 biosynthetic process  
Ontology : EGO-EBIcytokine activity  interleukin-9 receptor binding  extracellular region  extracellular space  inflammatory response  immune response  growth factor activity  positive regulation of cell proliferation  positive regulation of cell growth  positive regulation of interleukin-5 biosynthetic process  
Pathways : BIOCARTARegulation of hematopoiesis by cytokines [Genes]    Cytokine Network [Genes]    Erythrocyte Differentiation Pathway [Genes]   
Pathways : KEGGCytokine-cytokine receptor interaction    Jak-STAT signaling pathway    Asthma   
NDEx NetworkIL9
Atlas of Cancer Signalling NetworkIL9
Wikipedia pathwaysIL9
Orthology - Evolution
OrthoDB3578
GeneTree (enSembl)ENSG00000145839
Phylogenetic Trees/Animal Genes : TreeFamIL9
HOVERGENP15248
HOGENOMP15248
Homologs : HomoloGeneIL9
Homology/Alignments : Family Browser (UCSC)IL9
Gene fusions - Rearrangements
Fusion : MitelmanHBS1L/IL9 [6q23.3/5q31.1]  [t(5;6)(q31;q23)]  
Fusion: TCGAHBS1L 6q23.3 IL9 5q31.1 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IL9
dbVarIL9
ClinVarIL9
1000_GenomesIL9 
Exome Variant ServerIL9
ExAC (Exome Aggregation Consortium)IL9 (select the gene name)
Genetic variants : HAPMAP3578
Genomic Variants (DGV)IL9 [DGVbeta]
DECIPHERIL9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIL9 
Mutations
ICGC Data PortalIL9 
TCGA Data PortalIL9 
Broad Tumor PortalIL9
OASIS PortalIL9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIL9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIL9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IL9
DgiDB (Drug Gene Interaction Database)IL9
DoCM (Curated mutations)IL9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IL9 (select a term)
intoGenIL9
Cancer3DIL9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM146931   
Orphanet
MedgenIL9
Genetic Testing Registry IL9
NextProtP15248 [Medical]
TSGene3578
GENETestsIL9
Target ValidationIL9
Huge Navigator IL9 [HugePedia]
snp3D : Map Gene to Disease3578
BioCentury BCIQIL9
ClinGenIL9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3578
Chemical/Pharm GKB GenePA29845
Clinical trialIL9
Miscellaneous
canSAR (ICR)IL9 (select the gene name)
Probes
Litterature
PubMed116 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIL9
EVEXIL9
GoPubMedIL9
iHOPIL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 12:38:29 CEST 2017

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