Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ILF2 (interleukin enhancer binding factor 2)

Identity

Alias_namesinterleukin enhancer binding factor 2, 45kD
interleukin enhancer binding factor 2, 45kDa
Alias_symbol (synonym)NF45
Other aliasPRO3063
HGNC (Hugo) ILF2
LocusID (NCBI) 3608
Atlas_Id 52546
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153661788 and ends at 153671028 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FCRL1 (1q23.1) / ILF2 (1q21.3)NCAM2 (21q21.1) / ILF2 (1q21.3)SAP18 (13q12.11) / ILF2 (1q21.3)
WDSUB1 (2q24.2) / ILF2 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ILF2   6037
Cards
Entrez_Gene (NCBI)ILF2  3608  interleukin enhancer binding factor 2
AliasesNF45; PRO3063
GeneCards (Weizmann)ILF2
Ensembl hg19 (Hinxton)ENSG00000143621 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143621 [Gene_View]  ENSG00000143621 [Sequence]  chr1:153661788-153671028 [Contig_View]  ILF2 [Vega]
ICGC DataPortalENSG00000143621
TCGA cBioPortalILF2
AceView (NCBI)ILF2
Genatlas (Paris)ILF2
WikiGenes3608
SOURCE (Princeton)ILF2
Genetics Home Reference (NIH)ILF2
Genomic and cartography
GoldenPath hg38 (UCSC)ILF2  -     chr1:153661788-153671028 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ILF2  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblILF2 - 1q21.3 [CytoView hg19]  ILF2 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIILF2 [Mapview hg19]  ILF2 [Mapview hg38]
OMIM603181   
Gene and transcription
Genbank (Entrez)AK223326 AK302214 AK310615 AK313364 BC000382
RefSeq transcript (Entrez)NM_001267809 NM_004515
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ILF2
Cluster EST : UnigeneHs.75117 [ NCBI ]
CGAP (NCI)Hs.75117
Alternative Splicing GalleryENSG00000143621
Gene ExpressionILF2 [ NCBI-GEO ]   ILF2 [ EBI - ARRAY_EXPRESS ]   ILF2 [ SEEK ]   ILF2 [ MEM ]
Gene Expression Viewer (FireBrowse)ILF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3608
GTEX Portal (Tissue expression)ILF2
Human Protein AtlasENSG00000143621-ILF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12905   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12905  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12905
Splice isoforms : SwissVarQ12905
PhosPhoSitePlusQ12905
Domaine pattern : Prosite (Expaxy)DZF (PS51703)   
Domains : Interpro (EBI)2-5-oligoadenylate_synth_N    DZF_dom   
Domain families : Pfam (Sanger)DZF (PF07528)   
Domain families : Pfam (NCBI)pfam07528   
Domain families : Smart (EMBL)DZF (SM00572)  
Conserved Domain (NCBI)ILF2
DMDM Disease mutations3608
Blocks (Seattle)ILF2
SuperfamilyQ12905
Human Protein Atlas [tissue]ENSG00000143621-ILF2 [tissue]
Peptide AtlasQ12905
HPRD04419
IPIIPI00005198   IPI00643578   IPI00641665   
Protein Interaction databases
DIP (DOE-UCLA)Q12905
IntAct (EBI)Q12905
FunCoupENSG00000143621
BioGRIDILF2
STRING (EMBL)ILF2
ZODIACILF2
Ontologies - Pathways
QuickGOQ12905
Ontology : AmiGODNA binding  RNA binding  double-stranded RNA binding  protein binding  ATP binding  extracellular region  extracellular region  nucleus  nucleolus  transcription, DNA-templated  membrane  transferase activity  specific granule lumen  neutrophil degranulation  positive regulation of transcription, DNA-templated  tertiary granule lumen  ficolin-1-rich granule lumen  ribonucleoprotein complex  
Ontology : EGO-EBIDNA binding  RNA binding  double-stranded RNA binding  protein binding  ATP binding  extracellular region  extracellular region  nucleus  nucleolus  transcription, DNA-templated  membrane  transferase activity  specific granule lumen  neutrophil degranulation  positive regulation of transcription, DNA-templated  tertiary granule lumen  ficolin-1-rich granule lumen  ribonucleoprotein complex  
NDEx NetworkILF2
Atlas of Cancer Signalling NetworkILF2
Wikipedia pathwaysILF2
Orthology - Evolution
OrthoDB3608
GeneTree (enSembl)ENSG00000143621
Phylogenetic Trees/Animal Genes : TreeFamILF2
HOGENOMQ12905
Homologs : HomoloGeneILF2
Homology/Alignments : Family Browser (UCSC)ILF2
Gene fusions - Rearrangements
Fusion : QuiverILF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerILF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ILF2
dbVarILF2
ClinVarILF2
1000_GenomesILF2 
Exome Variant ServerILF2
ExAC (Exome Aggregation Consortium)ENSG00000143621
GNOMAD BrowserENSG00000143621
Varsome BrowserILF2
Genetic variants : HAPMAP3608
Genomic Variants (DGV)ILF2 [DGVbeta]
DECIPHERILF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisILF2 
Mutations
ICGC Data PortalILF2 
TCGA Data PortalILF2 
Broad Tumor PortalILF2
OASIS PortalILF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICILF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDILF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ILF2
DgiDB (Drug Gene Interaction Database)ILF2
DoCM (Curated mutations)ILF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ILF2 (select a term)
intoGenILF2
Cancer3DILF2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603181   
Orphanet
DisGeNETILF2
MedgenILF2
Genetic Testing Registry ILF2
NextProtQ12905 [Medical]
TSGene3608
GENETestsILF2
Target ValidationILF2
Huge Navigator ILF2 [HugePedia]
snp3D : Map Gene to Disease3608
BioCentury BCIQILF2
ClinGenILF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3608
Chemical/Pharm GKB GenePA29852
Clinical trialILF2
Miscellaneous
canSAR (ICR)ILF2 (select the gene name)
DataMed IndexILF2
Probes
Litterature
PubMed129 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineILF2
EVEXILF2
GoPubMedILF2
iHOPILF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Feb 14 16:36:14 CET 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.