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ILKAP (ILK associated serine/threonine phosphatase)

Identity

Alias_namesMg2?? dependent 1O
Alias_symbol (synonym)DKFZP434J2031
FLJ10181
PPM1O
Other aliasILKAP2
ILKAP3
PP2C-DELTA
HGNC (Hugo) ILKAP
LocusID (NCBI) 80895
Atlas_Id 55279
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 238170402 and ends at 238203683 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ILKAP (2q37.3) / PER2 (2q37.3)ILKAP 2q37.3 / PER2 2q37.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ILKAP   15566
Cards
Entrez_Gene (NCBI)ILKAP  80895  ILK associated serine/threonine phosphatase
AliasesILKAP2; ILKAP3; PP2C-DELTA; PPM1O
GeneCards (Weizmann)ILKAP
Ensembl hg19 (Hinxton)ENSG00000132323 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132323 [Gene_View]  chr2:238170402-238203683 [Contig_View]  ILKAP [Vega]
ICGC DataPortalENSG00000132323
TCGA cBioPortalILKAP
AceView (NCBI)ILKAP
Genatlas (Paris)ILKAP
WikiGenes80895
SOURCE (Princeton)ILKAP
Genetics Home Reference (NIH)ILKAP
Genomic and cartography
GoldenPath hg38 (UCSC)ILKAP  -     chr2:238170402-238203683 -  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ILKAP  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblILKAP - 2q37.3 [CytoView hg19]  ILKAP - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBIILKAP [Mapview hg19]  ILKAP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001043 AK055417 AL136850 AY024365 BC006576
RefSeq transcript (Entrez)NM_030768 NM_176799
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ILKAP
Cluster EST : UnigeneHs.92033 [ NCBI ]
CGAP (NCI)Hs.92033
Alternative Splicing GalleryENSG00000132323
Gene ExpressionILKAP [ NCBI-GEO ]   ILKAP [ EBI - ARRAY_EXPRESS ]   ILKAP [ SEEK ]   ILKAP [ MEM ]
Gene Expression Viewer (FireBrowse)ILKAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80895
GTEX Portal (Tissue expression)ILKAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0C8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0C8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0C8
Splice isoforms : SwissVarQ9H0C8
PhosPhoSitePlusQ9H0C8
Domaine pattern : Prosite (Expaxy)PPM_1 (PS01032)    PPM_2 (PS51746)   
Domains : Interpro (EBI)PP2C    PP2C_BS    PPM-type_phosphatase_dom   
Domain families : Pfam (Sanger)PP2C (PF00481)   
Domain families : Pfam (NCBI)pfam00481   
Domain families : Smart (EMBL)PP2Cc (SM00332)  
Conserved Domain (NCBI)ILKAP
DMDM Disease mutations80895
Blocks (Seattle)ILKAP
SuperfamilyQ9H0C8
Human Protein AtlasENSG00000132323
Peptide AtlasQ9H0C8
HPRD17147
IPIIPI00006164   IPI00917304   IPI00917171   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0C8
IntAct (EBI)Q9H0C8
FunCoupENSG00000132323
BioGRIDILKAP
STRING (EMBL)ILKAP
ZODIACILKAP
Ontologies - Pathways
QuickGOQ9H0C8
Ontology : AmiGOprotein serine/threonine phosphatase activity  protein binding  cytoplasm  protein dephosphorylation  metal ion binding  
Ontology : EGO-EBIprotein serine/threonine phosphatase activity  protein binding  cytoplasm  protein dephosphorylation  metal ion binding  
NDEx NetworkILKAP
Atlas of Cancer Signalling NetworkILKAP
Wikipedia pathwaysILKAP
Orthology - Evolution
OrthoDB80895
GeneTree (enSembl)ENSG00000132323
Phylogenetic Trees/Animal Genes : TreeFamILKAP
HOVERGENQ9H0C8
HOGENOMQ9H0C8
Homologs : HomoloGeneILKAP
Homology/Alignments : Family Browser (UCSC)ILKAP
Gene fusions - Rearrangements
Fusion : MitelmanILKAP/PER2 [2q37.3/2q37.3]  
Fusion: TCGAILKAP 2q37.3 PER2 2q37.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerILKAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ILKAP
dbVarILKAP
ClinVarILKAP
1000_GenomesILKAP 
Exome Variant ServerILKAP
ExAC (Exome Aggregation Consortium)ILKAP (select the gene name)
Genetic variants : HAPMAP80895
Genomic Variants (DGV)ILKAP [DGVbeta]
DECIPHERILKAP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisILKAP 
Mutations
ICGC Data PortalILKAP 
TCGA Data PortalILKAP 
Broad Tumor PortalILKAP
OASIS PortalILKAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICILKAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDILKAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ILKAP
DgiDB (Drug Gene Interaction Database)ILKAP
DoCM (Curated mutations)ILKAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ILKAP (select a term)
intoGenILKAP
Cancer3DILKAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenILKAP
Genetic Testing Registry ILKAP
NextProtQ9H0C8 [Medical]
TSGene80895
GENETestsILKAP
Target ValidationILKAP
Huge Navigator ILKAP [HugePedia]
snp3D : Map Gene to Disease80895
BioCentury BCIQILKAP
ClinGenILKAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80895
Chemical/Pharm GKB GenePA29856
Clinical trialILKAP
Miscellaneous
canSAR (ICR)ILKAP (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineILKAP
EVEXILKAP
GoPubMedILKAP
iHOPILKAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:13:18 CEST 2017

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