Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IMMT (inner membrane mitochondrial protein)

Identity

Alias_namesinner membrane protein
Alias_symbol (synonym)P87
P89
HMP
MINOS2
Mic60
Other aliasP87/89
PIG4
PIG52
HGNC (Hugo) IMMT
LocusID (NCBI) 10989
Atlas_Id 54377
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 86371055 and ends at 86422893 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HCST (19q13.12) / IMMT (2p11.2)IMMT (2p11.2) / CDH1 (16q22.1)IMMT (2p11.2) / FOXJ3 (1p34.2)
IMMT (2p11.2) / HSPD1 (2q33.1)IMMT (2p11.2) / IMMT (2p11.2)SLC25A26 (3p14.1) / IMMT (2p11.2)
STRAP (12p12.3) / IMMT (2p11.2)SLC25A26 3p14.1 / IMMT 2p11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IMMT   6047
Cards
Entrez_Gene (NCBI)IMMT  10989  inner membrane mitochondrial protein
AliasesHMP; MINOS2; Mic60; P87; 
P87/89; P89; PIG4; PIG52
GeneCards (Weizmann)IMMT
Ensembl hg19 (Hinxton)ENSG00000132305 [Gene_View]  chr2:86371055-86422893 [Contig_View]  IMMT [Vega]
Ensembl hg38 (Hinxton)ENSG00000132305 [Gene_View]  chr2:86371055-86422893 [Contig_View]  IMMT [Vega]
ICGC DataPortalENSG00000132305
TCGA cBioPortalIMMT
AceView (NCBI)IMMT
Genatlas (Paris)IMMT
WikiGenes10989
SOURCE (Princeton)IMMT
Genetics Home Reference (NIH)IMMT
Genomic and cartography
GoldenPath hg19 (UCSC)IMMT  -     chr2:86371055-86422893 -  2p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)IMMT  -     2p11.2   [Description]    (hg38-Dec_2013)
EnsemblIMMT - 2p11.2 [CytoView hg19]  IMMT - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIIMMT [Mapview hg19]  IMMT [Mapview hg38]
OMIM600378   
Gene and transcription
Genbank (Entrez)AF148646 AK225780 AK296676 AK299014 AK299596
RefSeq transcript (Entrez)NM_001100169 NM_001100170 NM_006839
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)IMMT
Cluster EST : UnigeneHs.148559 [ NCBI ]
CGAP (NCI)Hs.148559
Alternative Splicing GalleryENSG00000132305
Gene ExpressionIMMT [ NCBI-GEO ]   IMMT [ EBI - ARRAY_EXPRESS ]   IMMT [ SEEK ]   IMMT [ MEM ]
Gene Expression Viewer (FireBrowse)IMMT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10989
GTEX Portal (Tissue expression)IMMT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16891   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16891  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16891
Splice isoforms : SwissVarQ16891
PhosPhoSitePlusQ16891
Domains : Interpro (EBI)Mt-IM_prot_Mitofilin   
Domain families : Pfam (Sanger)Mitofilin (PF09731)   
Domain families : Pfam (NCBI)pfam09731   
Conserved Domain (NCBI)IMMT
DMDM Disease mutations10989
Blocks (Seattle)IMMT
SuperfamilyQ16891
Human Protein AtlasENSG00000132305
Peptide AtlasQ16891
HPRD02658
IPIIPI00009960   IPI00554469   IPI00910079   IPI00655644   IPI01012925   IPI00470829   IPI00940432   IPI00926611   IPI00925553   IPI01015181   
Protein Interaction databases
DIP (DOE-UCLA)Q16891
IntAct (EBI)Q16891
FunCoupENSG00000132305
BioGRIDIMMT
STRING (EMBL)IMMT
ZODIACIMMT
Ontologies - Pathways
QuickGOQ16891
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial inner membrane  biological_process  membrane  cristae formation  myelin sheath  poly(A) RNA binding  mitochondrial calcium ion homeostasis  MICOS complex  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial inner membrane  biological_process  membrane  cristae formation  myelin sheath  poly(A) RNA binding  mitochondrial calcium ion homeostasis  MICOS complex  
NDEx NetworkIMMT
Atlas of Cancer Signalling NetworkIMMT
Wikipedia pathwaysIMMT
Orthology - Evolution
OrthoDB10989
GeneTree (enSembl)ENSG00000132305
Phylogenetic Trees/Animal Genes : TreeFamIMMT
HOVERGENQ16891
HOGENOMQ16891
Homologs : HomoloGeneIMMT
Homology/Alignments : Family Browser (UCSC)IMMT
Gene fusions - Rearrangements
Fusion : MitelmanSLC25A26/IMMT [3p14.1/2p11.2]  [t(2;3)(p11;p14)]  
Fusion: TCGASLC25A26 3p14.1 IMMT 2p11.2 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIMMT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IMMT
dbVarIMMT
ClinVarIMMT
1000_GenomesIMMT 
Exome Variant ServerIMMT
ExAC (Exome Aggregation Consortium)IMMT (select the gene name)
Genetic variants : HAPMAP10989
Genomic Variants (DGV)IMMT [DGVbeta]
DECIPHER (Syndromes)2:86371055-86422893  ENSG00000132305
CONAN: Copy Number AnalysisIMMT 
Mutations
ICGC Data PortalIMMT 
TCGA Data PortalIMMT 
Broad Tumor PortalIMMT
OASIS PortalIMMT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIMMT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIMMT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch IMMT
DgiDB (Drug Gene Interaction Database)IMMT
DoCM (Curated mutations)IMMT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IMMT (select a term)
intoGenIMMT
Cancer3DIMMT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600378   
Orphanet
MedgenIMMT
Genetic Testing Registry IMMT
NextProtQ16891 [Medical]
TSGene10989
GENETestsIMMT
Huge Navigator IMMT [HugePedia]
snp3D : Map Gene to Disease10989
BioCentury BCIQIMMT
ClinGenIMMT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10989
Chemical/Pharm GKB GenePA29858
Clinical trialIMMT
Miscellaneous
canSAR (ICR)IMMT (select the gene name)
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIMMT
EVEXIMMT
GoPubMedIMMT
iHOPIMMT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:10:48 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.