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IMP3 (IMP3, U3 small nucleolar ribonucleoprotein)

Identity

Alias_namesMRPS4
C15orf12
mitochondrial ribosomal protein S4
chromosome 15 open reading frame 12
IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)
Alias_symbol (synonym)FLJ10968
BRMS2
Other alias
HGNC (Hugo) IMP3
LocusID (NCBI) 55272
Atlas_Id 47527
Location 15q24.2  [Link to chromosome band 15q24]
Location_base_pair Starts at 75639085 and ends at 75640323 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IMP3 (15q24.2) / MTHFD1L (6q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IMP3   14497
Cards
Entrez_Gene (NCBI)IMP3  55272  IMP3, U3 small nucleolar ribonucleoprotein
AliasesBRMS2; C15orf12; MRPS4
GeneCards (Weizmann)IMP3
Ensembl hg19 (Hinxton)ENSG00000177971 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177971 [Gene_View]  chr15:75639085-75640323 [Contig_View]  IMP3 [Vega]
ICGC DataPortalENSG00000177971
TCGA cBioPortalIMP3
AceView (NCBI)IMP3
Genatlas (Paris)IMP3
WikiGenes55272
SOURCE (Princeton)IMP3
Genetics Home Reference (NIH)IMP3
Genomic and cartography
GoldenPath hg38 (UCSC)IMP3  -     chr15:75639085-75640323 -  15q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IMP3  -     15q24.2   [Description]    (hg19-Feb_2009)
EnsemblIMP3 - 15q24.2 [CytoView hg19]  IMP3 - 15q24.2 [CytoView hg38]
Mapping of homologs : NCBIIMP3 [Mapview hg19]  IMP3 [Mapview hg38]
OMIM612980   
Gene and transcription
Genbank (Entrez)AA365493 AK001830 AK057531 AK223121 AL136913
RefSeq transcript (Entrez)NM_018285
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IMP3
Cluster EST : UnigeneHs.513043 [ NCBI ]
CGAP (NCI)Hs.513043
Alternative Splicing GalleryENSG00000177971
Gene ExpressionIMP3 [ NCBI-GEO ]   IMP3 [ EBI - ARRAY_EXPRESS ]   IMP3 [ SEEK ]   IMP3 [ MEM ]
Gene Expression Viewer (FireBrowse)IMP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55272
GTEX Portal (Tissue expression)IMP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NV31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NV31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NV31
Splice isoforms : SwissVarQ9NV31
PhosPhoSitePlusQ9NV31
Domaine pattern : Prosite (Expaxy)S4 (PS50889)   
Domains : Interpro (EBI)Ribosomal_S4/S9    Ribosomal_S4/S9_N    S4_RNA-bd   
Domain families : Pfam (Sanger)Ribosomal_S4 (PF00163)    S4 (PF01479)   
Domain families : Pfam (NCBI)pfam00163    pfam01479   
Domain families : Smart (EMBL)Ribosomal_S4 (SM01390)  S4 (SM00363)  
Conserved Domain (NCBI)IMP3
DMDM Disease mutations55272
Blocks (Seattle)IMP3
PDB (SRS)2CQJ   
PDB (PDBSum)2CQJ   
PDB (IMB)2CQJ   
PDB (RSDB)2CQJ   
Structural Biology KnowledgeBase2CQJ   
SCOP (Structural Classification of Proteins)2CQJ   
CATH (Classification of proteins structures)2CQJ   
SuperfamilyQ9NV31
Human Protein AtlasENSG00000177971
Peptide AtlasQ9NV31
HPRD12664
IPIIPI00019488   IPI01014160   
Protein Interaction databases
DIP (DOE-UCLA)Q9NV31
IntAct (EBI)Q9NV31
FunCoupENSG00000177971
BioGRIDIMP3
STRING (EMBL)IMP3
ZODIACIMP3
Ontologies - Pathways
QuickGOQ9NV31
Ontology : AmiGORNA binding  structural constituent of ribosome  protein binding  nucleus  nucleoplasm  nucleolus  rRNA processing  rRNA processing  small ribosomal subunit  rRNA binding  snoRNA binding  small-subunit processome  Mpp10 complex  positive regulation of translational fidelity  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  protein binding  nucleus  nucleoplasm  nucleolus  rRNA processing  rRNA processing  small ribosomal subunit  rRNA binding  snoRNA binding  small-subunit processome  Mpp10 complex  positive regulation of translational fidelity  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkIMP3
Atlas of Cancer Signalling NetworkIMP3
Wikipedia pathwaysIMP3
Orthology - Evolution
OrthoDB55272
GeneTree (enSembl)ENSG00000177971
Phylogenetic Trees/Animal Genes : TreeFamIMP3
HOVERGENQ9NV31
HOGENOMQ9NV31
Homologs : HomoloGeneIMP3
Homology/Alignments : Family Browser (UCSC)IMP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIMP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IMP3
dbVarIMP3
ClinVarIMP3
1000_GenomesIMP3 
Exome Variant ServerIMP3
ExAC (Exome Aggregation Consortium)IMP3 (select the gene name)
Genetic variants : HAPMAP55272
Genomic Variants (DGV)IMP3 [DGVbeta]
DECIPHERIMP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIMP3 
Mutations
ICGC Data PortalIMP3 
TCGA Data PortalIMP3 
Broad Tumor PortalIMP3
OASIS PortalIMP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIMP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIMP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IMP3
DgiDB (Drug Gene Interaction Database)IMP3
DoCM (Curated mutations)IMP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IMP3 (select a term)
intoGenIMP3
Cancer3DIMP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612980   
Orphanet
MedgenIMP3
Genetic Testing Registry IMP3
NextProtQ9NV31 [Medical]
TSGene55272
GENETestsIMP3
Target ValidationIMP3
Huge Navigator IMP3 [HugePedia]
snp3D : Map Gene to Disease55272
BioCentury BCIQIMP3
ClinGenIMP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55272
Chemical/Pharm GKB GenePA25517
Clinical trialIMP3
Miscellaneous
canSAR (ICR)IMP3 (select the gene name)
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIMP3
EVEXIMP3
GoPubMedIMP3
iHOPIMP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:38:30 CEST 2017

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