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IMP4 (IMP4 homolog, U3 small nucleolar ribonucleoprotein)

Identity

Alias_namesIMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)
IMP4, U3 small nucleolar ribonucleoprotein
Alias_symbol (synonym)MGC19606
BXDC4
Other alias
HGNC (Hugo) IMP4
LocusID (NCBI) 92856
Atlas_Id 64609
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 130342225 and ends at 130347961 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IMP4 (2q21.1) / NCKAP5 (2q21.2)IMP4 (2q21.1) / SLCO3A1 (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IMP4   30856
Cards
Entrez_Gene (NCBI)IMP4  92856  IMP4 homolog, U3 small nucleolar ribonucleoprotein
AliasesBXDC4
GeneCards (Weizmann)IMP4
Ensembl hg19 (Hinxton)ENSG00000136718 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136718 [Gene_View]  chr2:130342225-130347961 [Contig_View]  IMP4 [Vega]
ICGC DataPortalENSG00000136718
TCGA cBioPortalIMP4
AceView (NCBI)IMP4
Genatlas (Paris)IMP4
WikiGenes92856
SOURCE (Princeton)IMP4
Genetics Home Reference (NIH)IMP4
Genomic and cartography
GoldenPath hg38 (UCSC)IMP4  -     chr2:130342225-130347961 +  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IMP4  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblIMP4 - 2q21.1 [CytoView hg19]  IMP4 - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBIIMP4 [Mapview hg19]  IMP4 [Mapview hg38]
OMIM612981   
Gene and transcription
Genbank (Entrez)AF054996 AK289878 AK292345 AK312808 AY364245
RefSeq transcript (Entrez)NM_001320304 NM_001320305 NM_001320306 NM_001320307 NM_001320309 NM_001320310 NM_001320311 NM_033416
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IMP4
Cluster EST : UnigeneHs.91579 [ NCBI ]
CGAP (NCI)Hs.91579
Alternative Splicing GalleryENSG00000136718
Gene ExpressionIMP4 [ NCBI-GEO ]   IMP4 [ EBI - ARRAY_EXPRESS ]   IMP4 [ SEEK ]   IMP4 [ MEM ]
Gene Expression Viewer (FireBrowse)IMP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92856
GTEX Portal (Tissue expression)IMP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96G21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96G21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96G21
Splice isoforms : SwissVarQ96G21
PhosPhoSitePlusQ96G21
Domaine pattern : Prosite (Expaxy)BRIX (PS50833)   
Domains : Interpro (EBI)Anticodon-bd    Brix   
Domain families : Pfam (Sanger)Brix (PF04427)   
Domain families : Pfam (NCBI)pfam04427   
Domain families : Smart (EMBL)Brix (SM00879)  
Conserved Domain (NCBI)IMP4
DMDM Disease mutations92856
Blocks (Seattle)IMP4
SuperfamilyQ96G21
Human Protein AtlasENSG00000136718
Peptide AtlasQ96G21
HPRD10002
IPIIPI00181116   IPI00917458   IPI00916398   IPI00916569   IPI00916691   IPI00917966   
Protein Interaction databases
DIP (DOE-UCLA)Q96G21
IntAct (EBI)Q96G21
FunCoupENSG00000136718
BioGRIDIMP4
STRING (EMBL)IMP4
ZODIACIMP4
Ontologies - Pathways
QuickGOQ96G21
Ontology : AmiGOfibrillar center  protein binding  nucleoplasm  nucleolus  rRNA processing  rRNA processing  rRNA processing  snoRNA binding  small-subunit processome  Mpp10 complex  rRNA primary transcript binding  
Ontology : EGO-EBIfibrillar center  protein binding  nucleoplasm  nucleolus  rRNA processing  rRNA processing  rRNA processing  snoRNA binding  small-subunit processome  Mpp10 complex  rRNA primary transcript binding  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkIMP4
Atlas of Cancer Signalling NetworkIMP4
Wikipedia pathwaysIMP4
Orthology - Evolution
OrthoDB92856
GeneTree (enSembl)ENSG00000136718
Phylogenetic Trees/Animal Genes : TreeFamIMP4
HOVERGENQ96G21
HOGENOMQ96G21
Homologs : HomoloGeneIMP4
Homology/Alignments : Family Browser (UCSC)IMP4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIMP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IMP4
dbVarIMP4
ClinVarIMP4
1000_GenomesIMP4 
Exome Variant ServerIMP4
ExAC (Exome Aggregation Consortium)IMP4 (select the gene name)
Genetic variants : HAPMAP92856
Genomic Variants (DGV)IMP4 [DGVbeta]
DECIPHERIMP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIMP4 
Mutations
ICGC Data PortalIMP4 
TCGA Data PortalIMP4 
Broad Tumor PortalIMP4
OASIS PortalIMP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIMP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIMP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IMP4
DgiDB (Drug Gene Interaction Database)IMP4
DoCM (Curated mutations)IMP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IMP4 (select a term)
intoGenIMP4
Cancer3DIMP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612981   
Orphanet
MedgenIMP4
Genetic Testing Registry IMP4
NextProtQ96G21 [Medical]
TSGene92856
GENETestsIMP4
Target ValidationIMP4
Huge Navigator IMP4 [HugePedia]
snp3D : Map Gene to Disease92856
BioCentury BCIQIMP4
ClinGenIMP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92856
Chemical/Pharm GKB GenePA142671656
Clinical trialIMP4
Miscellaneous
canSAR (ICR)IMP4 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIMP4
EVEXIMP4
GoPubMedIMP4
iHOPIMP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:53:28 CEST 2017

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