Atlas of Genetics and Cytogenetics in Oncology and Haematology


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IMPG1 (interphotoreceptor matrix proteoglycan 1)

Identity

Alias_namesSPACR
sialoprotein associated with cones and rods
Alias_symbol (synonym)IPM150
GP147
Other aliasVMD4
HGNC (Hugo) IMPG1
LocusID (NCBI) 3617
Atlas_Id 64613
Location 6q14.1  [Link to chromosome band 6q14]
Location_base_pair Starts at 75921114 and ends at 76072678 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHD8 (14q11.2) / IMPG1 (6q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)IMPG1   6055
Cards
Entrez_Gene (NCBI)IMPG1  3617  interphotoreceptor matrix proteoglycan 1
AliasesGP147; IPM150; SPACR; VMD4
GeneCards (Weizmann)IMPG1
Ensembl hg19 (Hinxton)ENSG00000112706 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112706 [Gene_View]  chr6:75921114-76072678 [Contig_View]  IMPG1 [Vega]
ICGC DataPortalENSG00000112706
TCGA cBioPortalIMPG1
AceView (NCBI)IMPG1
Genatlas (Paris)IMPG1
WikiGenes3617
SOURCE (Princeton)IMPG1
Genetics Home Reference (NIH)IMPG1
Genomic and cartography
GoldenPath hg38 (UCSC)IMPG1  -     chr6:75921114-76072678 -  6q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IMPG1  -     6q14.1   [Description]    (hg19-Feb_2009)
EnsemblIMPG1 - 6q14.1 [CytoView hg19]  IMPG1 - 6q14.1 [CytoView hg38]
Mapping of homologs : NCBIIMPG1 [Mapview hg19]  IMPG1 [Mapview hg38]
OMIM602870   616151   
Gene and transcription
Genbank (Entrez)AF047492 BC117450 BC117452 BU728582 CA391789
RefSeq transcript (Entrez)NM_001282368 NM_001563
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IMPG1
Cluster EST : UnigeneHs.590893 [ NCBI ]
CGAP (NCI)Hs.590893
Alternative Splicing GalleryENSG00000112706
Gene ExpressionIMPG1 [ NCBI-GEO ]   IMPG1 [ EBI - ARRAY_EXPRESS ]   IMPG1 [ SEEK ]   IMPG1 [ MEM ]
Gene Expression Viewer (FireBrowse)IMPG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3617
GTEX Portal (Tissue expression)IMPG1
Human Protein AtlasENSG00000112706-IMPG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17R60   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17R60  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17R60
Splice isoforms : SwissVarQ17R60
PhosPhoSitePlusQ17R60
Domaine pattern : Prosite (Expaxy)SEA (PS50024)   
Domains : Interpro (EBI)EGF-like_dom    SEA_dom   
Domain families : Pfam (Sanger)SEA (PF01390)   
Domain families : Pfam (NCBI)pfam01390   
Domain families : Smart (EMBL)SEA (SM00200)  
Conserved Domain (NCBI)IMPG1
DMDM Disease mutations3617
Blocks (Seattle)IMPG1
SuperfamilyQ17R60
Human Protein Atlas [tissue]ENSG00000112706-IMPG1 [tissue]
Peptide AtlasQ17R60
HPRD04186
IPIIPI00746452   IPI00470840   IPI00552180   
Protein Interaction databases
DIP (DOE-UCLA)Q17R60
IntAct (EBI)Q17R60
FunCoupENSG00000112706
BioGRIDIMPG1
STRING (EMBL)IMPG1
ZODIACIMPG1
Ontologies - Pathways
QuickGOQ17R60
Ontology : AmiGOextracellular matrix structural constituent  proteinaceous extracellular matrix  visual perception  
Ontology : EGO-EBIextracellular matrix structural constituent  proteinaceous extracellular matrix  visual perception  
NDEx NetworkIMPG1
Atlas of Cancer Signalling NetworkIMPG1
Wikipedia pathwaysIMPG1
Orthology - Evolution
OrthoDB3617
GeneTree (enSembl)ENSG00000112706
Phylogenetic Trees/Animal Genes : TreeFamIMPG1
HOVERGENQ17R60
HOGENOMQ17R60
Homologs : HomoloGeneIMPG1
Homology/Alignments : Family Browser (UCSC)IMPG1
Gene fusions - Rearrangements
Tumor Fusion PortalIMPG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIMPG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IMPG1
dbVarIMPG1
ClinVarIMPG1
1000_GenomesIMPG1 
Exome Variant ServerIMPG1
ExAC (Exome Aggregation Consortium)ENSG00000112706
GNOMAD BrowserENSG00000112706
Genetic variants : HAPMAP3617
Genomic Variants (DGV)IMPG1 [DGVbeta]
DECIPHERIMPG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIMPG1 
Mutations
ICGC Data PortalIMPG1 
TCGA Data PortalIMPG1 
Broad Tumor PortalIMPG1
OASIS PortalIMPG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIMPG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIMPG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch IMPG1
DgiDB (Drug Gene Interaction Database)IMPG1
DoCM (Curated mutations)IMPG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IMPG1 (select a term)
intoGenIMPG1
Cancer3DIMPG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602870    616151   
Orphanet14017   
DisGeNETIMPG1
MedgenIMPG1
Genetic Testing Registry IMPG1
NextProtQ17R60 [Medical]
TSGene3617
GENETestsIMPG1
Target ValidationIMPG1
Huge Navigator IMPG1 [HugePedia]
snp3D : Map Gene to Disease3617
BioCentury BCIQIMPG1
ClinGenIMPG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3617
Chemical/Pharm GKB GenePA29865
Clinical trialIMPG1
Miscellaneous
canSAR (ICR)IMPG1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIMPG1
EVEXIMPG1
GoPubMedIMPG1
iHOPIMPG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Dec 27 18:39:43 CET 2017

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