Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

IMPG2 (interphotoreceptor matrix proteoglycan 2)

Identity

Alias_symbol (synonym)IPM200
RP56
Other aliasSPACRCAN
VMD5
HGNC (Hugo) IMPG2
LocusID (NCBI) 50939
Atlas_Id 54378
Location 3q12.3  [Link to chromosome band 3q12]
Location_base_pair Starts at 101222546 and ends at 101320575 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FILIP1L (3q12.1) / IMPG2 (3q12.3)GSK3B (3q13.33) / IMPG2 (3q12.3)IMPG2 (3q12.3) / IMPG2 (3q12.3)
FILIP1L 3q12.1 / IMPG2 3q12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)IMPG2   18362
Cards
Entrez_Gene (NCBI)IMPG2  50939  interphotoreceptor matrix proteoglycan 2
AliasesIPM200; RP56; SPACRCAN; VMD5
GeneCards (Weizmann)IMPG2
Ensembl hg19 (Hinxton)ENSG00000081148 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000081148 [Gene_View]  chr3:101222546-101320575 [Contig_View]  IMPG2 [Vega]
ICGC DataPortalENSG00000081148
TCGA cBioPortalIMPG2
AceView (NCBI)IMPG2
Genatlas (Paris)IMPG2
WikiGenes50939
SOURCE (Princeton)IMPG2
Genetics Home Reference (NIH)IMPG2
Genomic and cartography
GoldenPath hg38 (UCSC)IMPG2  -     chr3:101222546-101320575 -  3q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)IMPG2  -     3q12.3   [Description]    (hg19-Feb_2009)
EnsemblIMPG2 - 3q12.3 [CytoView hg19]  IMPG2 - 3q12.3 [CytoView hg38]
Mapping of homologs : NCBIIMPG2 [Mapview hg19]  IMPG2 [Mapview hg38]
OMIM607056   613581   616152   
Gene and transcription
Genbank (Entrez)AB593127 AF157624 AF173155 AF319972 AL713046
RefSeq transcript (Entrez)NM_016247
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)IMPG2
Cluster EST : UnigeneHs.209249 [ NCBI ]
CGAP (NCI)Hs.209249
Alternative Splicing GalleryENSG00000081148
Gene ExpressionIMPG2 [ NCBI-GEO ]   IMPG2 [ EBI - ARRAY_EXPRESS ]   IMPG2 [ SEEK ]   IMPG2 [ MEM ]
Gene Expression Viewer (FireBrowse)IMPG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50939
GTEX Portal (Tissue expression)IMPG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZV3
Splice isoforms : SwissVarQ9BZV3
PhosPhoSitePlusQ9BZV3
Domaine pattern : Prosite (Expaxy)EGF_2 (PS01186)    EGF_3 (PS50026)    SEA (PS50024)   
Domains : Interpro (EBI)EGF-like_CS    EGF-like_dom    IMPG2    SEA_dom   
Domain families : Pfam (Sanger)SEA (PF01390)   
Domain families : Pfam (NCBI)pfam01390   
Domain families : Smart (EMBL)SEA (SM00200)  
Conserved Domain (NCBI)IMPG2
DMDM Disease mutations50939
Blocks (Seattle)IMPG2
SuperfamilyQ9BZV3
Human Protein AtlasENSG00000081148
Peptide AtlasQ9BZV3
HPRD06135
IPIIPI00873766   IPI00797794   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZV3
IntAct (EBI)Q9BZV3
FunCoupENSG00000081148
BioGRIDIMPG2
STRING (EMBL)IMPG2
ZODIACIMPG2
Ontologies - Pathways
QuickGOQ9BZV3
Ontology : AmiGOextracellular matrix structural constituent  hyaluronic acid binding  proteinaceous extracellular matrix  visual perception  heparin binding  integral component of membrane  interphotoreceptor matrix  receptor complex  
Ontology : EGO-EBIextracellular matrix structural constituent  hyaluronic acid binding  proteinaceous extracellular matrix  visual perception  heparin binding  integral component of membrane  interphotoreceptor matrix  receptor complex  
NDEx NetworkIMPG2
Atlas of Cancer Signalling NetworkIMPG2
Wikipedia pathwaysIMPG2
Orthology - Evolution
OrthoDB50939
GeneTree (enSembl)ENSG00000081148
Phylogenetic Trees/Animal Genes : TreeFamIMPG2
HOVERGENQ9BZV3
HOGENOMQ9BZV3
Homologs : HomoloGeneIMPG2
Homology/Alignments : Family Browser (UCSC)IMPG2
Gene fusions - Rearrangements
Fusion : MitelmanFILIP1L/IMPG2 [3q12.1/3q12.3]  [t(3;3)(q12;q12)]  
Fusion : MitelmanGSK3B/IMPG2 [3q13.33/3q12.3]  [t(3;3)(q12;q13)]  
Fusion: TCGAFILIP1L 3q12.1 IMPG2 3q12.3 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerIMPG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)IMPG2
dbVarIMPG2
ClinVarIMPG2
1000_GenomesIMPG2 
Exome Variant ServerIMPG2
ExAC (Exome Aggregation Consortium)IMPG2 (select the gene name)
Genetic variants : HAPMAP50939
Genomic Variants (DGV)IMPG2 [DGVbeta]
DECIPHERIMPG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisIMPG2 
Mutations
ICGC Data PortalIMPG2 
TCGA Data PortalIMPG2 
Broad Tumor PortalIMPG2
OASIS PortalIMPG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICIMPG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDIMPG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch IMPG2
DgiDB (Drug Gene Interaction Database)IMPG2
DoCM (Curated mutations)IMPG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)IMPG2 (select a term)
intoGenIMPG2
Cancer3DIMPG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607056    613581    616152   
Orphanet659    14017   
MedgenIMPG2
Genetic Testing Registry IMPG2
NextProtQ9BZV3 [Medical]
TSGene50939
GENETestsIMPG2
Huge Navigator IMPG2 [HugePedia]
snp3D : Map Gene to Disease50939
BioCentury BCIQIMPG2
ClinGenIMPG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50939
Chemical/Pharm GKB GenePA29866
Clinical trialIMPG2
Miscellaneous
canSAR (ICR)IMPG2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineIMPG2
EVEXIMPG2
GoPubMedIMPG2
iHOPIMPG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:20:30 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.