Atlas of Genetics and Cytogenetics in Oncology and Haematology

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INA (internexin neuronal intermediate filament protein, alpha)

Identity

Other namesNEF5
NF-66
TXBP-1
HGNC (Hugo) INA
LocusID (NCBI) 9118
Location 10q24.33
Location_base_pair Starts at 105036920 and ends at 105050108 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)INA   6057
Entrez_Gene (NCBI)INA  9118  internexin neuronal intermediate filament protein, alpha
Cards
GeneCards (Weizmann)INA
Ensembl (Hinxton)ENSG00000148798 [Gene_View]  chr10:105036920-105050108 [Contig_View]  INA [Vega]
AceView (NCBI)INA
Genatlas (Paris)INA
SOURCE (Stanford)NM_032727
Genomic and cartography
GoldenPath (UCSC)INA  -  10q24.33   chr10:105036920-105050108 +  10q24.33   [Description]    (hg19-Feb_2009)
EnsemblINA - 10q24.33 [CytoView]
Mapping of homologs : NCBIINA [Mapview]
OMIM605338   
Gene and transcription
Genbank (Entrez)AB209785 AK293490 AK311620 BC006359 BM679369
RefSeq transcript (SRS)NM_032727
RefSeq transcript (Entrez)NM_032727
RefSeq genomic (SRS)AC_000142 NC_000010 NC_018921 NG_012318 NT_030059 NW_001838006 NW_004078068
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NG_012318 NT_030059 NW_001838006 NW_004078068
Consensus coding sequences : CCDS (NCBI)INA
Cluster EST : UnigeneHs.500916 [ SRS ] Hs.500916 [ NCBI ]
CGAP (NCI)Hs.500916
Alternative Splicing : Fast-db (Paris)GSHG0003659
Alternative Splicing GalleryENSG00000148798
Gene ExpressionINA [ NCBI-GEO ]   INA [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16352 (SRS) Q16352 (Uniprot)
NextProtQ16352
With graphics : InterProQ16352
Splice isoforms : SwissVarQ16352(Swissvar)
Domaine pattern : Prosite (SRS)IF (PS00226)   
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (SRS)F    IF    Intermed_filament_DNA-bd    Intermediate_filament_CS   
Domains : Interpro (EBI)F    IF    Intermed_filament_DNA-bd    Intermediate_filament_CS   
Related proteins : CluSTrQ16352
Domain families : Pfam (SRS)Filament (PF00038)    Filament_head (PF04732)   
Domain families : Pfam (Sanger)Filament (PF00038)    Filament_head (PF04732)   
Domain families : Pfam (NCBI)pfam00038    pfam04732   
DMDM9118
Blocks (Seattle)Q16352
Human Protein AtlasENSG00000148798
HPRD05628
IPIIPI00001453   IPI00386826   
Protein Interaction databases
DIP (DOE-UCLA)Q16352
IntAct (EBI)Q16352
FunCoupENSG00000148798
REACTOMEINA
Protein Interaction Database9118
BioGRIDINA
InParanoidQ16352
Interologous Interaction database Q16352
IntegromeDBINA
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)INA
SNP (GeneSNP Utah)INA
SNP : HGBaseINA
Genetic variants : HAPMAPINA
Somatic Mutations in Cancer : COSMICINA 
CONAN: Copy Number AnalysisINA 
Translocation Breakpoints in Cancer : TICdbINA 
Mutations and Diseases : HGMDINA
OMIM605338   
GENETests605338   
Disease Genetic AssociationINA
Huge Navigator INA [HugePedia]  INA [HugeCancerGEM]
Genomic VariantsINA  INA [DGVbeta]
snp3D : Map Gene to Disease9118
General knowledge
Homologs : HomoloGeneINA
Homology/Alignments : Family Browser (UCSC)INA
Phylogenetic Trees/Animal Genes : TreeFamINA
Chemical/Protein Interactions : CTD9118
Chemical/Pharm GKB GenePA29867
Clinical trialINA
Cancer Resource (Charite)ENSG00000148798
Ontology : AmiGOstructural constituent of cytoskeleton  neurofilament  nervous system development  cell differentiation  tissue regeneration  neurofilament cytoskeleton organization  
Ontology : EGO-EBIstructural constituent of cytoskeleton  neurofilament  nervous system development  cell differentiation  tissue regeneration  neurofilament cytoskeleton organization  
Pathways : KEGGCell Communication
Other databases
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
PubGeneINA
iHOPINA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:32:42 CEST 2013
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