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INA (internexin neuronal intermediate filament protein alpha)

Identity

Alias (NCBI)NEF5
NF-66
TXBP-1
HGNC (Hugo) INA
HGNC Alias symbNF-66
HGNC Previous nameNEF5
HGNC Previous nameinternexin neuronal intermediate filament protein, alpha
LocusID (NCBI) 9118
Atlas_Id 50337
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 103277138 and ends at 103290346 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
INA (10q24.33) / HSPA9 (5q31.2)NFKB2 (10q24.32) / INA (10q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)INA   6057
Cards
Entrez_Gene (NCBI)INA    internexin neuronal intermediate filament protein alpha
AliasesNEF5; NF-66; TXBP-1
GeneCards (Weizmann)INA
Ensembl hg19 (Hinxton)ENSG00000148798 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148798 [Gene_View]  ENSG00000148798 [Sequence]  chr10:103277138-103290346 [Contig_View]  INA [Vega]
ICGC DataPortalENSG00000148798
TCGA cBioPortalINA
AceView (NCBI)INA
Genatlas (Paris)INA
SOURCE (Princeton)INA
Genetics Home Reference (NIH)INA
Genomic and cartography
GoldenPath hg38 (UCSC)INA  -     chr10:103277138-103290346 +  10q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INA  -     10q24.33   [Description]    (hg19-Feb_2009)
GoldenPathINA - 10q24.33 [CytoView hg19]  INA - 10q24.33 [CytoView hg38]
ImmunoBaseENSG00000148798
Genome Data Viewer NCBIINA [Mapview hg19]  
OMIM605338   
Gene and transcription
Genbank (Entrez)AB209785 AK293490 AK311620 BC006359 BM679369
RefSeq transcript (Entrez)NM_032727
Consensus coding sequences : CCDS (NCBI)INA
Gene ExpressionINA [ NCBI-GEO ]   INA [ EBI - ARRAY_EXPRESS ]   INA [ SEEK ]   INA [ MEM ]
Gene Expression Viewer (FireBrowse)INA [ Firebrowse - Broad ]
GenevisibleExpression of INA in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9118
GTEX Portal (Tissue expression)INA
Human Protein AtlasENSG00000148798-INA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16352   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16352  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16352
PhosPhoSitePlusQ16352
Domaine pattern : Prosite (Expaxy)IF_ROD_1 (PS00226)    IF_ROD_2 (PS51842)   
Domains : Interpro (EBI)Alpha-Inx    IF_conserved    IF_rod_dom    IF_rod_dom_coil1B    Intermed_filament_DNA-bd   
Domain families : Pfam (Sanger)Filament (PF00038)    Filament_head (PF04732)   
Domain families : Pfam (NCBI)pfam00038    pfam04732   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)INA
SuperfamilyQ16352
AlphaFold pdb e-kbQ16352   
Human Protein Atlas [tissue]ENSG00000148798-INA [tissue]
HPRD05628
Protein Interaction databases
DIP (DOE-UCLA)Q16352
IntAct (EBI)Q16352
BioGRIDINA
STRING (EMBL)INA
ZODIACINA
Ontologies - Pathways
QuickGOQ16352
Ontology : AmiGOstructural constituent of cytoskeleton  protein binding  extracellular space  neurofilament  substantia nigra development  cell differentiation  cytoplasmic ribonucleoprotein granule  neurofilament cytoskeleton organization  Schaffer collateral - CA1 synapse  postsynapse  structural constituent of postsynaptic actin cytoskeleton  postsynaptic actin cytoskeleton organization  structural constituent of postsynaptic intermediate filament cytoskeleton  postsynaptic intermediate filament cytoskeleton organization  cellular response to leukemia inhibitory factor  
Ontology : EGO-EBIstructural constituent of cytoskeleton  protein binding  extracellular space  neurofilament  substantia nigra development  cell differentiation  cytoplasmic ribonucleoprotein granule  neurofilament cytoskeleton organization  Schaffer collateral - CA1 synapse  postsynapse  structural constituent of postsynaptic actin cytoskeleton  postsynaptic actin cytoskeleton organization  structural constituent of postsynaptic intermediate filament cytoskeleton  postsynaptic intermediate filament cytoskeleton organization  cellular response to leukemia inhibitory factor  
NDEx NetworkINA
Atlas of Cancer Signalling NetworkINA
Wikipedia pathwaysINA
Orthology - Evolution
OrthoDB9118
GeneTree (enSembl)ENSG00000148798
Phylogenetic Trees/Animal Genes : TreeFamINA
Homologs : HomoloGeneINA
Homology/Alignments : Family Browser (UCSC)INA
Gene fusions - Rearrangements
Fusion : QuiverINA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INA
dbVarINA
ClinVarINA
MonarchINA
1000_GenomesINA 
Exome Variant ServerINA
GNOMAD BrowserENSG00000148798
Varsome BrowserINA
ACMGINA variants
VarityQ16352
Genomic Variants (DGV)INA [DGVbeta]
DECIPHERINA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINA 
Mutations
ICGC Data PortalINA 
TCGA Data PortalINA 
Broad Tumor PortalINA
OASIS PortalINA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINA  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DINA
Mutations and Diseases : HGMDINA
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaINA
DgiDB (Drug Gene Interaction Database)INA
DoCM (Curated mutations)INA
CIViC (Clinical Interpretations of Variants in Cancer)INA
Cancer3DINA
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605338   
Orphanet
DisGeNETINA
MedgenINA
Genetic Testing Registry INA
NextProtQ16352 [Medical]
GENETestsINA
Target ValidationINA
Huge Navigator INA [HugePedia]
ClinGenINA
Clinical trials, drugs, therapy
MyCancerGenomeINA
Protein Interactions : CTDINA
Pharm GKB GenePA29867
PharosQ16352
Clinical trialINA
Miscellaneous
canSAR (ICR)INA
HarmonizomeINA
DataMed IndexINA
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXINA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:13:57 CEST 2021

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