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INA (internexin neuronal intermediate filament protein alpha)

Identity

Alias_namesNEF5
internexin neuronal intermediate filament protein
Alias_symbol (synonym)NF-66
Other aliasTXBP-1
HGNC (Hugo) INA
LocusID (NCBI) 9118
Atlas_Id 50337
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 105036920 and ends at 105050108 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
INA (10q24.33) / HSPA9 (5q31.2)NFKB2 (10q24.32) / INA (10q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INA   6057
Cards
Entrez_Gene (NCBI)INA  9118  internexin neuronal intermediate filament protein alpha
AliasesNEF5; NF-66; TXBP-1
GeneCards (Weizmann)INA
Ensembl hg19 (Hinxton)ENSG00000148798 [Gene_View]  chr10:105036920-105050108 [Contig_View]  INA [Vega]
Ensembl hg38 (Hinxton)ENSG00000148798 [Gene_View]  chr10:105036920-105050108 [Contig_View]  INA [Vega]
ICGC DataPortalENSG00000148798
TCGA cBioPortalINA
AceView (NCBI)INA
Genatlas (Paris)INA
WikiGenes9118
SOURCE (Princeton)INA
Genetics Home Reference (NIH)INA
Genomic and cartography
GoldenPath hg19 (UCSC)INA  -     chr10:105036920-105050108 +  10q24.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)INA  -     10q24.33   [Description]    (hg38-Dec_2013)
EnsemblINA - 10q24.33 [CytoView hg19]  INA - 10q24.33 [CytoView hg38]
Mapping of homologs : NCBIINA [Mapview hg19]  INA [Mapview hg38]
OMIM605338   
Gene and transcription
Genbank (Entrez)AB209785 AK293490 AK311620 BC006359 BM679369
RefSeq transcript (Entrez)NM_032727
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_012318 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)INA
Cluster EST : UnigeneHs.500916 [ NCBI ]
CGAP (NCI)Hs.500916
Alternative Splicing GalleryENSG00000148798
Gene ExpressionINA [ NCBI-GEO ]   INA [ EBI - ARRAY_EXPRESS ]   INA [ SEEK ]   INA [ MEM ]
Gene Expression Viewer (FireBrowse)INA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9118
GTEX Portal (Tissue expression)INA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16352   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16352  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16352
Splice isoforms : SwissVarQ16352
PhosPhoSitePlusQ16352
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)Alpha-Inx    IF    Intermed_filament_DNA-bd    Intermediate_filament_CS   
Domain families : Pfam (Sanger)Filament (PF00038)    Filament_head (PF04732)   
Domain families : Pfam (NCBI)pfam00038    pfam04732   
Conserved Domain (NCBI)INA
DMDM Disease mutations9118
Blocks (Seattle)INA
SuperfamilyQ16352
Human Protein AtlasENSG00000148798
Peptide AtlasQ16352
HPRD05628
IPIIPI00001453   IPI00386826   
Protein Interaction databases
DIP (DOE-UCLA)Q16352
IntAct (EBI)Q16352
FunCoupENSG00000148798
BioGRIDINA
STRING (EMBL)INA
ZODIACINA
Ontologies - Pathways
QuickGOQ16352
Ontology : AmiGOstructural constituent of cytoskeleton  extracellular space  nucleoplasm  neurofilament  substantia nigra development  cell differentiation  nuclear membrane  cytoplasmic ribonucleoprotein granule  myelin sheath  intermediate filament cytoskeleton  neurofilament cytoskeleton organization  
Ontology : EGO-EBIstructural constituent of cytoskeleton  extracellular space  nucleoplasm  neurofilament  substantia nigra development  cell differentiation  nuclear membrane  cytoplasmic ribonucleoprotein granule  myelin sheath  intermediate filament cytoskeleton  neurofilament cytoskeleton organization  
NDEx NetworkINA
Atlas of Cancer Signalling NetworkINA
Wikipedia pathwaysINA
Orthology - Evolution
OrthoDB9118
GeneTree (enSembl)ENSG00000148798
Phylogenetic Trees/Animal Genes : TreeFamINA
HOVERGENQ16352
HOGENOMQ16352
Homologs : HomoloGeneINA
Homology/Alignments : Family Browser (UCSC)INA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INA
dbVarINA
ClinVarINA
1000_GenomesINA 
Exome Variant ServerINA
ExAC (Exome Aggregation Consortium)INA (select the gene name)
Genetic variants : HAPMAP9118
Genomic Variants (DGV)INA [DGVbeta]
DECIPHER (Syndromes)10:105036920-105050108  ENSG00000148798
CONAN: Copy Number AnalysisINA 
Mutations
ICGC Data PortalINA 
TCGA Data PortalINA 
Broad Tumor PortalINA
OASIS PortalINA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDINA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch INA
DgiDB (Drug Gene Interaction Database)INA
DoCM (Curated mutations)INA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INA (select a term)
intoGenINA
Cancer3DINA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605338   
Orphanet
MedgenINA
Genetic Testing Registry INA
NextProtQ16352 [Medical]
TSGene9118
GENETestsINA
Huge Navigator INA [HugePedia]
snp3D : Map Gene to Disease9118
BioCentury BCIQINA
ClinGenINA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9118
Chemical/Pharm GKB GenePA29867
Clinical trialINA
Miscellaneous
canSAR (ICR)INA (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINA
EVEXINA
GoPubMedINA
iHOPINA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:05:14 CEST 2017

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