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INAFM1 (InaF motif containing 1)

Identity

Alias_namesPRR24
proline rich 24
Other alias
HGNC (Hugo) INAFM1
LocusID (NCBI) 255783
Atlas_Id 64614
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 47274885 and ends at 47275723 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
INAFM1 (19q13.32) / RPSA (3p22.1)TPM4 (19p13.12) / INAFM1 (19q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INAFM1   27406
Cards
Entrez_Gene (NCBI)INAFM1  255783  InaF motif containing 1
AliasesPRR24
GeneCards (Weizmann)INAFM1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:47274885-47275723 [Contig_View]  INAFM1 [Vega]
TCGA cBioPortalINAFM1
AceView (NCBI)INAFM1
Genatlas (Paris)INAFM1
WikiGenes255783
SOURCE (Princeton)INAFM1
Genetics Home Reference (NIH)INAFM1
Genomic and cartography
GoldenPath hg38 (UCSC)INAFM1  -     chr19:47274885-47275723 +  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INAFM1  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblINAFM1 - 19q13.32 [CytoView hg19]  INAFM1 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIINAFM1 [Mapview hg19]  INAFM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC022076 BC045749 BC064510 BE896741 BQ708656
RefSeq transcript (Entrez)NM_178511
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INAFM1
Cluster EST : UnigeneHs.128690 [ NCBI ]
CGAP (NCI)Hs.128690
Gene ExpressionINAFM1 [ NCBI-GEO ]   INAFM1 [ EBI - ARRAY_EXPRESS ]   INAFM1 [ SEEK ]   INAFM1 [ MEM ]
Gene Expression Viewer (FireBrowse)INAFM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255783
GTEX Portal (Tissue expression)INAFM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JVW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JVW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JVW0
Splice isoforms : SwissVarC9JVW0
PhosPhoSitePlusC9JVW0
Domains : Interpro (EBI)InaF-motif   
Domain families : Pfam (Sanger)InaF-motif (PF15018)   
Domain families : Pfam (NCBI)pfam15018   
Conserved Domain (NCBI)INAFM1
DMDM Disease mutations255783
Blocks (Seattle)INAFM1
SuperfamilyC9JVW0
Peptide AtlasC9JVW0
IPIIPI00647297   
Protein Interaction databases
DIP (DOE-UCLA)C9JVW0
IntAct (EBI)C9JVW0
BioGRIDINAFM1
STRING (EMBL)INAFM1
ZODIACINAFM1
Ontologies - Pathways
QuickGOC9JVW0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkINAFM1
Atlas of Cancer Signalling NetworkINAFM1
Wikipedia pathwaysINAFM1
Orthology - Evolution
OrthoDB255783
Phylogenetic Trees/Animal Genes : TreeFamINAFM1
HOVERGENC9JVW0
HOGENOMC9JVW0
Homologs : HomoloGeneINAFM1
Homology/Alignments : Family Browser (UCSC)INAFM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINAFM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INAFM1
dbVarINAFM1
ClinVarINAFM1
1000_GenomesINAFM1 
Exome Variant ServerINAFM1
ExAC (Exome Aggregation Consortium)INAFM1 (select the gene name)
Genetic variants : HAPMAP255783
Genomic Variants (DGV)INAFM1 [DGVbeta]
DECIPHERINAFM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINAFM1 
Mutations
ICGC Data PortalINAFM1 
TCGA Data PortalINAFM1 
Broad Tumor PortalINAFM1
OASIS PortalINAFM1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDINAFM1
BioMutasearch INAFM1
DgiDB (Drug Gene Interaction Database)INAFM1
DoCM (Curated mutations)INAFM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INAFM1 (select a term)
intoGenINAFM1
Cancer3DINAFM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenINAFM1
Genetic Testing Registry INAFM1
NextProtC9JVW0 [Medical]
TSGene255783
GENETestsINAFM1
Target ValidationINAFM1
Huge Navigator INAFM1 [HugePedia]
snp3D : Map Gene to Disease255783
BioCentury BCIQINAFM1
ClinGenINAFM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255783
Chemical/Pharm GKB GenePA165394234
Clinical trialINAFM1
Miscellaneous
canSAR (ICR)INAFM1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINAFM1
EVEXINAFM1
GoPubMedINAFM1
iHOPINAFM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:12 CEST 2017

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