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INAFM2 (InaF motif containing 2)

Identity

Alias_namesLINC00984
long intergenic non-protein coding RNA 984
InaF-motif containing 2
Alias_symbol (synonym)OGU1
Other alias
HGNC (Hugo) INAFM2
LocusID (NCBI) 100505573
Atlas_Id 64615
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 40324056 and ends at 40326715 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INAFM2   35165
Cards
Entrez_Gene (NCBI)INAFM2  100505573  InaF motif containing 2
AliasesLINC00984; OGU1
GeneCards (Weizmann)INAFM2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:40324056-40326715 [Contig_View]  INAFM2 [Vega]
TCGA cBioPortalINAFM2
AceView (NCBI)INAFM2
Genatlas (Paris)INAFM2
WikiGenes100505573
SOURCE (Princeton)INAFM2
Genetics Home Reference (NIH)INAFM2
Genomic and cartography
GoldenPath hg38 (UCSC)INAFM2  -     chr15:40324056-40326715 +  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INAFM2  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblINAFM2 - 15q15.1 [CytoView hg19]  INAFM2 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIINAFM2 [Mapview hg19]  INAFM2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI125471 AI125670 AK123770 AL832909 BC036424
RefSeq transcript (Entrez)NM_001301268
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INAFM2
Cluster EST : UnigeneHs.530791 [ NCBI ]
CGAP (NCI)Hs.530791
Gene ExpressionINAFM2 [ NCBI-GEO ]   INAFM2 [ EBI - ARRAY_EXPRESS ]   INAFM2 [ SEEK ]   INAFM2 [ MEM ]
Gene Expression Viewer (FireBrowse)INAFM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505573
GTEX Portal (Tissue expression)INAFM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMQ5
Splice isoforms : SwissVarP0DMQ5
PhosPhoSitePlusP0DMQ5
Domains : Interpro (EBI)InaF-motif   
Domain families : Pfam (Sanger)InaF-motif (PF15018)   
Domain families : Pfam (NCBI)pfam15018   
Conserved Domain (NCBI)INAFM2
DMDM Disease mutations100505573
Blocks (Seattle)INAFM2
SuperfamilyP0DMQ5
Peptide AtlasP0DMQ5
Protein Interaction databases
DIP (DOE-UCLA)P0DMQ5
IntAct (EBI)P0DMQ5
BioGRIDINAFM2
STRING (EMBL)INAFM2
ZODIACINAFM2
Ontologies - Pathways
QuickGOP0DMQ5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkINAFM2
Atlas of Cancer Signalling NetworkINAFM2
Wikipedia pathwaysINAFM2
Orthology - Evolution
OrthoDB100505573
Phylogenetic Trees/Animal Genes : TreeFamINAFM2
HOVERGENP0DMQ5
HOGENOMP0DMQ5
Homologs : HomoloGeneINAFM2
Homology/Alignments : Family Browser (UCSC)INAFM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINAFM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INAFM2
dbVarINAFM2
ClinVarINAFM2
1000_GenomesINAFM2 
Exome Variant ServerINAFM2
ExAC (Exome Aggregation Consortium)INAFM2 (select the gene name)
Genetic variants : HAPMAP100505573
Genomic Variants (DGV)INAFM2 [DGVbeta]
DECIPHERINAFM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINAFM2 
Mutations
ICGC Data PortalINAFM2 
TCGA Data PortalINAFM2 
Broad Tumor PortalINAFM2
OASIS PortalINAFM2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDINAFM2
BioMutasearch INAFM2
DgiDB (Drug Gene Interaction Database)INAFM2
DoCM (Curated mutations)INAFM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INAFM2 (select a term)
intoGenINAFM2
Cancer3DINAFM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenINAFM2
Genetic Testing Registry INAFM2
NextProtP0DMQ5 [Medical]
TSGene100505573
GENETestsINAFM2
Target ValidationINAFM2
Huge Navigator INAFM2 [HugePedia]
snp3D : Map Gene to Disease100505573
BioCentury BCIQINAFM2
ClinGenINAFM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505573
Chemical/Pharm GKB GenePA166123695
Clinical trialINAFM2
Miscellaneous
canSAR (ICR)INAFM2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINAFM2
EVEXINAFM2
GoPubMedINAFM2
iHOPINAFM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:11:12 CEST 2017

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