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INAVA (innate immunity activator)

Identity

Alias (NCBI)C1orf106
HGNC (Hugo) INAVA
LocusID (NCBI) 55765
Atlas_Id 80641
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 200891499 and ends at 200915736 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)INAVA   25599
Cards
Entrez_Gene (NCBI)INAVA  55765  innate immunity activator
AliasesC1orf106
GeneCards (Weizmann)INAVA
Ensembl hg19 (Hinxton)ENSG00000163362 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163362 [Gene_View]  ENSG00000163362 [Sequence]  chr1:200891499-200915736 [Contig_View]  INAVA [Vega]
ICGC DataPortalENSG00000163362
TCGA cBioPortalINAVA
AceView (NCBI)INAVA
Genatlas (Paris)INAVA
WikiGenes55765
SOURCE (Princeton)INAVA
Genetics Home Reference (NIH)INAVA
Genomic and cartography
GoldenPath hg38 (UCSC)INAVA  -     chr1:200891499-200915736 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INAVA  -     1q32.1   [Description]    (hg19-Feb_2009)
GoldenPathINAVA - 1q32.1 [CytoView hg19]  INAVA - 1q32.1 [CytoView hg38]
ImmunoBaseENSG00000163362
genome Data Viewer NCBIINAVA [Mapview hg19]  
OMIM618051   618077   
Gene and transcription
Genbank (Entrez)AK001583 AK001763 AK025066 AK303885 AK316510
RefSeq transcript (Entrez)NM_001142569 NM_001367289 NM_001367290 NM_018265
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INAVA
Alternative Splicing GalleryENSG00000163362
Gene ExpressionINAVA [ NCBI-GEO ]   INAVA [ EBI - ARRAY_EXPRESS ]   INAVA [ SEEK ]   INAVA [ MEM ]
Gene Expression Viewer (FireBrowse)INAVA [ Firebrowse - Broad ]
GenevisibleExpression of INAVA in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55765
GTEX Portal (Tissue expression)INAVA
Human Protein AtlasENSG00000163362-INAVA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KP66   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KP66  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KP66
Splice isoforms : SwissVarQ3KP66
PhosPhoSitePlusQ3KP66
Domains : Interpro (EBI)DUF3338    INAVA   
Domain families : Pfam (Sanger)DUF3338 (PF11819)   
Domain families : Pfam (NCBI)pfam11819   
Conserved Domain (NCBI)INAVA
DMDM Disease mutations55765
Blocks (Seattle)INAVA
SuperfamilyQ3KP66
Human Protein Atlas [tissue]ENSG00000163362-INAVA [tissue]
Peptide AtlasQ3KP66
IPIIPI00019430   IPI00974032   IPI00979307   IPI01012185   
Protein Interaction databases
DIP (DOE-UCLA)Q3KP66
IntAct (EBI)Q3KP66
FunCoupENSG00000163362
BioGRIDINAVA
STRING (EMBL)INAVA
ZODIACINAVA
Ontologies - Pathways
QuickGOQ3KP66
Ontology : AmiGOactivation of MAPK activity  pattern recognition receptor signaling pathway  cytokine production involved in immune response  protein binding  nucleus  cytoplasm  positive regulation of protein ubiquitination  positive regulation of protein ubiquitination  response to peptidoglycan  response to muramyl dipeptide  positive regulation of interleukin-1 beta production  positive regulation of interleukin-10 production  positive regulation of interleukin-6 production  positive regulation of stress-activated MAPK cascade  adherens junction maintenance  adherens junction maintenance  positive regulation of I-kappaB kinase/NF-kappaB signaling  innate immune response  intestinal epithelial structure maintenance  nucleotide-binding oligomerization domain containing 2 signaling pathway  reactive oxygen species biosynthetic process  
Ontology : EGO-EBIactivation of MAPK activity  pattern recognition receptor signaling pathway  cytokine production involved in immune response  protein binding  nucleus  cytoplasm  positive regulation of protein ubiquitination  positive regulation of protein ubiquitination  response to peptidoglycan  response to muramyl dipeptide  positive regulation of interleukin-1 beta production  positive regulation of interleukin-10 production  positive regulation of interleukin-6 production  positive regulation of stress-activated MAPK cascade  adherens junction maintenance  adherens junction maintenance  positive regulation of I-kappaB kinase/NF-kappaB signaling  innate immune response  intestinal epithelial structure maintenance  nucleotide-binding oligomerization domain containing 2 signaling pathway  reactive oxygen species biosynthetic process  
NDEx NetworkINAVA
Atlas of Cancer Signalling NetworkINAVA
Wikipedia pathwaysINAVA
Orthology - Evolution
OrthoDB55765
GeneTree (enSembl)ENSG00000163362
Phylogenetic Trees/Animal Genes : TreeFamINAVA
HOGENOMQ3KP66
Homologs : HomoloGeneINAVA
Homology/Alignments : Family Browser (UCSC)INAVA
Gene fusions - Rearrangements
Fusion : QuiverINAVA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINAVA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INAVA
dbVarINAVA
ClinVarINAVA
1000_GenomesINAVA 
Exome Variant ServerINAVA
GNOMAD BrowserENSG00000163362
Varsome BrowserINAVA
Genetic variants : HAPMAP55765
Genomic Variants (DGV)INAVA [DGVbeta]
DECIPHERINAVA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINAVA 
Mutations
ICGC Data PortalINAVA 
TCGA Data PortalINAVA 
Broad Tumor PortalINAVA
OASIS PortalINAVA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINAVA  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DINAVA
Mutations and Diseases : HGMDINAVA
BioMutasearch INAVA
DgiDB (Drug Gene Interaction Database)INAVA
DoCM (Curated mutations)INAVA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INAVA (select a term)
intoGenINAVA
Cancer3DINAVA(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618051    618077   
Orphanet
DisGeNETINAVA
MedgenINAVA
Genetic Testing Registry INAVA
NextProtQ3KP66 [Medical]
TSGene55765
GENETestsINAVA
Target ValidationINAVA
Huge Navigator INAVA [HugePedia]
snp3D : Map Gene to Disease55765
BioCentury BCIQINAVA
ClinGenINAVA
Clinical trials, drugs, therapy
Protein Interactions : CTD55765
Pharm GKB GenePA142672490
Clinical trialINAVA
Miscellaneous
canSAR (ICR)INAVA (select the gene name)
HarmonizomeINAVA
DataMed IndexINAVA
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINAVA
EVEXINAVA
GoPubMedINAVA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:59:08 CEST 2020

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