Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

INCA1 (inhibitor of CDK, cyclin A1 interacting protein 1)

Identity

Other aliasHSD45
HGNC (Hugo) INCA1
LocusID (NCBI) 388324
Atlas_Id 52715
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4891425 and ends at 4900905 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
INCA1 (17p13.2) / CAMTA2 (17p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INCA1   32224
Cards
Entrez_Gene (NCBI)INCA1  388324  inhibitor of CDK, cyclin A1 interacting protein 1
AliasesHSD45
GeneCards (Weizmann)INCA1
Ensembl hg19 (Hinxton)ENSG00000196388 [Gene_View]  chr17:4891425-4900905 [Contig_View]  INCA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196388 [Gene_View]  chr17:4891425-4900905 [Contig_View]  INCA1 [Vega]
ICGC DataPortalENSG00000196388
TCGA cBioPortalINCA1
AceView (NCBI)INCA1
Genatlas (Paris)INCA1
WikiGenes388324
SOURCE (Princeton)INCA1
Genetics Home Reference (NIH)INCA1
Genomic and cartography
GoldenPath hg19 (UCSC)INCA1  -     chr17:4891425-4900905 -  17p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)INCA1  -     17p13.2   [Description]    (hg38-Dec_2013)
EnsemblINCA1 - 17p13.2 [CytoView hg19]  INCA1 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIINCA1 [Mapview hg19]  INCA1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY601906 AY601907 AY604176 BC119781 BC122873
RefSeq transcript (Entrez)NM_001167985 NM_001167986 NM_001167987 NM_213726
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)INCA1
Cluster EST : UnigeneHs.658926 [ NCBI ]
CGAP (NCI)Hs.658926
Alternative Splicing GalleryENSG00000196388
Gene ExpressionINCA1 [ NCBI-GEO ]   INCA1 [ EBI - ARRAY_EXPRESS ]   INCA1 [ SEEK ]   INCA1 [ MEM ]
Gene Expression Viewer (FireBrowse)INCA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388324
GTEX Portal (Tissue expression)INCA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VD86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VD86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VD86
Splice isoforms : SwissVarQ0VD86
PhosPhoSitePlusQ0VD86
Domains : Interpro (EBI)INCA1   
Domain families : Pfam (Sanger)INCA1 (PF15142)   
Domain families : Pfam (NCBI)pfam15142   
Conserved Domain (NCBI)INCA1
DMDM Disease mutations388324
Blocks (Seattle)INCA1
SuperfamilyQ0VD86
Human Protein AtlasENSG00000196388
Peptide AtlasQ0VD86
HPRD17150
IPIIPI00412780   IPI00874179   
Protein Interaction databases
DIP (DOE-UCLA)Q0VD86
IntAct (EBI)Q0VD86
FunCoupENSG00000196388
BioGRIDINCA1
STRING (EMBL)INCA1
ZODIACINCA1
Ontologies - Pathways
QuickGOQ0VD86
Ontology : AmiGOcyclin-dependent protein serine/threonine kinase inhibitor activity  protein binding  nucleus  cytoplasm  negative regulation of cell proliferation  cyclin binding  negative regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of apoptotic signaling pathway  
Ontology : EGO-EBIcyclin-dependent protein serine/threonine kinase inhibitor activity  protein binding  nucleus  cytoplasm  negative regulation of cell proliferation  cyclin binding  negative regulation of cyclin-dependent protein serine/threonine kinase activity  positive regulation of apoptotic signaling pathway  
NDEx NetworkINCA1
Atlas of Cancer Signalling NetworkINCA1
Wikipedia pathwaysINCA1
Orthology - Evolution
OrthoDB388324
GeneTree (enSembl)ENSG00000196388
Phylogenetic Trees/Animal Genes : TreeFamINCA1
HOVERGENQ0VD86
HOGENOMQ0VD86
Homologs : HomoloGeneINCA1
Homology/Alignments : Family Browser (UCSC)INCA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINCA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INCA1
dbVarINCA1
ClinVarINCA1
1000_GenomesINCA1 
Exome Variant ServerINCA1
ExAC (Exome Aggregation Consortium)INCA1 (select the gene name)
Genetic variants : HAPMAP388324
Genomic Variants (DGV)INCA1 [DGVbeta]
DECIPHER (Syndromes)17:4891425-4900905  ENSG00000196388
CONAN: Copy Number AnalysisINCA1 
Mutations
ICGC Data PortalINCA1 
TCGA Data PortalINCA1 
Broad Tumor PortalINCA1
OASIS PortalINCA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINCA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDINCA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch INCA1
DgiDB (Drug Gene Interaction Database)INCA1
DoCM (Curated mutations)INCA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INCA1 (select a term)
intoGenINCA1
Cancer3DINCA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenINCA1
Genetic Testing Registry INCA1
NextProtQ0VD86 [Medical]
TSGene388324
GENETestsINCA1
Huge Navigator INCA1 [HugePedia]
snp3D : Map Gene to Disease388324
BioCentury BCIQINCA1
ClinGenINCA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388324
Chemical/Pharm GKB GenePA165431930
Clinical trialINCA1
Miscellaneous
canSAR (ICR)INCA1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINCA1
EVEXINCA1
GoPubMedINCA1
iHOPINCA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:05:14 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.