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INIP (INTS3 and NABP interacting protein)

Identity

Alias_namesC9orf80
chromosome 9 open reading frame 80
Alias_symbol (synonym)HSPC043
hSSBIP1
SOSS-C
MISE
Other aliasSOSSC
SSBIP1
HGNC (Hugo) INIP
LocusID (NCBI) 58493
Atlas_Id 51093
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 112683949 and ends at 112718149 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
INIP (9q32) / C5 (9q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INIP   24994
Cards
Entrez_Gene (NCBI)INIP  58493  INTS3 and NABP interacting protein
AliasesC9orf80; HSPC043; MISE; SOSSC; 
SSBIP1; hSSBIP1
GeneCards (Weizmann)INIP
Ensembl hg19 (Hinxton)ENSG00000148153 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148153 [Gene_View]  chr9:112683949-112718149 [Contig_View]  INIP [Vega]
ICGC DataPortalENSG00000148153
TCGA cBioPortalINIP
AceView (NCBI)INIP
Genatlas (Paris)INIP
WikiGenes58493
SOURCE (Princeton)INIP
Genetics Home Reference (NIH)INIP
Genomic and cartography
GoldenPath hg38 (UCSC)INIP  -     chr9:112683949-112718149 -  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INIP  -     9q32   [Description]    (hg19-Feb_2009)
EnsemblINIP - 9q32 [CytoView hg19]  INIP - 9q32 [CytoView hg38]
Mapping of homologs : NCBIINIP [Mapview hg19]  INIP [Mapview hg38]
OMIM613273   
Gene and transcription
Genbank (Entrez)AF161409 AF161411 AK000637 AK310007 BC013097
RefSeq transcript (Entrez)NM_001329585 NM_001329586 NM_001329587 NM_001329588 NM_001329589 NM_001329590 NM_021218
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INIP
Cluster EST : UnigeneHs.658575 [ NCBI ]
CGAP (NCI)Hs.658575
Alternative Splicing GalleryENSG00000148153
Gene ExpressionINIP [ NCBI-GEO ]   INIP [ EBI - ARRAY_EXPRESS ]   INIP [ SEEK ]   INIP [ MEM ]
Gene Expression Viewer (FireBrowse)INIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58493
GTEX Portal (Tissue expression)INIP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRY2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRY2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRY2
Splice isoforms : SwissVarQ9NRY2
PhosPhoSitePlusQ9NRY2
Domains : Interpro (EBI)SOSSC   
Domain families : Pfam (Sanger)SOSSC (PF15925)   
Domain families : Pfam (NCBI)pfam15925   
Conserved Domain (NCBI)INIP
DMDM Disease mutations58493
Blocks (Seattle)INIP
PDB (SRS)4OWT    4OWW   
PDB (PDBSum)4OWT    4OWW   
PDB (IMB)4OWT    4OWW   
PDB (RSDB)4OWT    4OWW   
Structural Biology KnowledgeBase4OWT    4OWW   
SCOP (Structural Classification of Proteins)4OWT    4OWW   
CATH (Classification of proteins structures)4OWT    4OWW   
SuperfamilyQ9NRY2
Human Protein AtlasENSG00000148153
Peptide AtlasQ9NRY2
HPRD12980
IPIIPI00000330   IPI00829819   IPI00645651   IPI00480029   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRY2
IntAct (EBI)Q9NRY2
FunCoupENSG00000148153
BioGRIDINIP
STRING (EMBL)INIP
ZODIACINIP
Ontologies - Pathways
QuickGOQ9NRY2
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  DNA repair  cellular response to DNA damage stimulus  response to ionizing radiation  SOSS complex  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  DNA repair  cellular response to DNA damage stimulus  response to ionizing radiation  SOSS complex  
NDEx NetworkINIP
Atlas of Cancer Signalling NetworkINIP
Wikipedia pathwaysINIP
Orthology - Evolution
OrthoDB58493
GeneTree (enSembl)ENSG00000148153
Phylogenetic Trees/Animal Genes : TreeFamINIP
HOVERGENQ9NRY2
HOGENOMQ9NRY2
Homologs : HomoloGeneINIP
Homology/Alignments : Family Browser (UCSC)INIP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INIP
dbVarINIP
ClinVarINIP
1000_GenomesINIP 
Exome Variant ServerINIP
ExAC (Exome Aggregation Consortium)INIP (select the gene name)
Genetic variants : HAPMAP58493
Genomic Variants (DGV)INIP [DGVbeta]
DECIPHERINIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINIP 
Mutations
ICGC Data PortalINIP 
TCGA Data PortalINIP 
Broad Tumor PortalINIP
OASIS PortalINIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINIP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDINIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch INIP
DgiDB (Drug Gene Interaction Database)INIP
DoCM (Curated mutations)INIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INIP (select a term)
intoGenINIP
Cancer3DINIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613273   
Orphanet
MedgenINIP
Genetic Testing Registry INIP
NextProtQ9NRY2 [Medical]
TSGene58493
GENETestsINIP
Target ValidationINIP
Huge Navigator INIP [HugePedia]
snp3D : Map Gene to Disease58493
BioCentury BCIQINIP
ClinGenINIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58493
Chemical/Pharm GKB GenePA134992982
Clinical trialINIP
Miscellaneous
canSAR (ICR)INIP (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINIP
EVEXINIP
GoPubMedINIP
iHOPINIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:13:23 CEST 2017

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