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INO80B (INO80 complex subunit B)

Identity

Alias_namesHMGA1L4
ZNHIT4
high mobility group AT-hook 1-like 4
zinc finger, HIT type 4
Alias_symbol (synonym)HMGIYL4
PAPA-1
hIes2
PAP-1BP
IES2
Other aliasPAPA1
HGNC (Hugo) INO80B
LocusID (NCBI) 83444
Atlas_Id 47220
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 74455023 and ends at 74457960 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GGPS1 (1q42.3) / INO80B (2p13.1)INO80B (2p13.1) / MOGS (2p13.1)INO80B (2p13.1) / WBP1 (2p13.1)
MYD88 (3p22.2) / INO80B (2p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INO80B   13324
Cards
Entrez_Gene (NCBI)INO80B  83444  INO80 complex subunit B
AliasesHMGA1L4; HMGIYL4; IES2; PAP-1BP; 
PAPA-1; PAPA1; ZNHIT4; hIes2
GeneCards (Weizmann)INO80B
Ensembl hg19 (Hinxton)ENSG00000115274 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115274 [Gene_View]  chr2:74455023-74457960 [Contig_View]  INO80B [Vega]
ICGC DataPortalENSG00000115274
TCGA cBioPortalINO80B
AceView (NCBI)INO80B
Genatlas (Paris)INO80B
WikiGenes83444
SOURCE (Princeton)INO80B
Genetics Home Reference (NIH)INO80B
Genomic and cartography
GoldenPath hg38 (UCSC)INO80B  -     chr2:74455023-74457960 +  2p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INO80B  -     2p13.1   [Description]    (hg19-Feb_2009)
EnsemblINO80B - 2p13.1 [CytoView hg19]  INO80B - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBIINO80B [Mapview hg19]  INO80B [Mapview hg38]
OMIM616456   
Gene and transcription
Genbank (Entrez)AB054538 AI978697 AK295889 AK295901 BC039617
RefSeq transcript (Entrez)NM_031288
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INO80B
Cluster EST : UnigeneHs.410786 [ NCBI ]
CGAP (NCI)Hs.410786
Alternative Splicing GalleryENSG00000115274
Gene ExpressionINO80B [ NCBI-GEO ]   INO80B [ EBI - ARRAY_EXPRESS ]   INO80B [ SEEK ]   INO80B [ MEM ]
Gene Expression Viewer (FireBrowse)INO80B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83444
GTEX Portal (Tissue expression)INO80B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C086   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C086  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C086
Splice isoforms : SwissVarQ9C086
PhosPhoSitePlusQ9C086
Domains : Interpro (EBI)INO80B/Ies2    INO80B_C    Znf_HIT   
Domain families : Pfam (Sanger)PAPA-1 (PF04795)    zf-HIT (PF04438)   
Domain families : Pfam (NCBI)pfam04795    pfam04438   
Domain families : Smart (EMBL)PAPA-1 (SM01406)  
Conserved Domain (NCBI)INO80B
DMDM Disease mutations83444
Blocks (Seattle)INO80B
SuperfamilyQ9C086
Human Protein AtlasENSG00000115274
Peptide AtlasQ9C086
HPRD17110
IPIIPI00929750   IPI00165176   IPI00917989   IPI00916772   IPI00915792   IPI00916127   IPI00917321   IPI00916296   
Protein Interaction databases
DIP (DOE-UCLA)Q9C086
IntAct (EBI)Q9C086
FunCoupENSG00000115274
BioGRIDINO80B
STRING (EMBL)INO80B
ZODIACINO80B
Ontologies - Pathways
QuickGOQ9C086
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  nucleolus  cytosol  plasma membrane  DNA repair  DNA recombination  chromatin remodeling  transcription, DNA-templated  regulation of transcription, DNA-templated  protein deubiquitination  Ino80 complex  metal ion binding  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  nucleolus  cytosol  plasma membrane  DNA repair  DNA recombination  chromatin remodeling  transcription, DNA-templated  regulation of transcription, DNA-templated  protein deubiquitination  Ino80 complex  metal ion binding  
NDEx NetworkINO80B
Atlas of Cancer Signalling NetworkINO80B
Wikipedia pathwaysINO80B
Orthology - Evolution
OrthoDB83444
GeneTree (enSembl)ENSG00000115274
Phylogenetic Trees/Animal Genes : TreeFamINO80B
HOVERGENQ9C086
HOGENOMQ9C086
Homologs : HomoloGeneINO80B
Homology/Alignments : Family Browser (UCSC)INO80B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINO80B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INO80B
dbVarINO80B
ClinVarINO80B
1000_GenomesINO80B 
Exome Variant ServerINO80B
ExAC (Exome Aggregation Consortium)INO80B (select the gene name)
Genetic variants : HAPMAP83444
Genomic Variants (DGV)INO80B [DGVbeta]
DECIPHERINO80B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINO80B 
Mutations
ICGC Data PortalINO80B 
TCGA Data PortalINO80B 
Broad Tumor PortalINO80B
OASIS PortalINO80B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINO80B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDINO80B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch INO80B
DgiDB (Drug Gene Interaction Database)INO80B
DoCM (Curated mutations)INO80B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INO80B (select a term)
intoGenINO80B
Cancer3DINO80B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616456   
Orphanet
MedgenINO80B
Genetic Testing Registry INO80B
NextProtQ9C086 [Medical]
TSGene83444
GENETestsINO80B
Target ValidationINO80B
Huge Navigator INO80B [HugePedia]
snp3D : Map Gene to Disease83444
BioCentury BCIQINO80B
ClinGenINO80B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83444
Chemical/Pharm GKB GenePA162392117
Clinical trialINO80B
Miscellaneous
canSAR (ICR)INO80B (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINO80B
EVEXINO80B
GoPubMedINO80B
iHOPINO80B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:13:23 CEST 2017

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