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INO80C (INO80 complex subunit C)

Identity

Alias_namesC18orf37
chromosome 18 open reading frame 37
Alias_symbol (synonym)FLJ38183
hIes6
IES6
Other alias
HGNC (Hugo) INO80C
LocusID (NCBI) 125476
Atlas_Id 47570
Location 18q12.2  [Link to chromosome band 18q12]
Location_base_pair Starts at 35468327 and ends at 35497991 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANXA5 (4q27) / INO80C (18q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INO80C   26994
Cards
Entrez_Gene (NCBI)INO80C  125476  INO80 complex subunit C
AliasesC18orf37; IES6; hIes6
GeneCards (Weizmann)INO80C
Ensembl hg19 (Hinxton)ENSG00000153391 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153391 [Gene_View]  chr18:35468327-35497991 [Contig_View]  INO80C [Vega]
ICGC DataPortalENSG00000153391
TCGA cBioPortalINO80C
AceView (NCBI)INO80C
Genatlas (Paris)INO80C
WikiGenes125476
SOURCE (Princeton)INO80C
Genetics Home Reference (NIH)INO80C
Genomic and cartography
GoldenPath hg38 (UCSC)INO80C  -     chr18:35468327-35497991 -  18q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INO80C  -     18q12.2   [Description]    (hg19-Feb_2009)
EnsemblINO80C - 18q12.2 [CytoView hg19]  INO80C - 18q12.2 [CytoView hg38]
Mapping of homologs : NCBIINO80C [Mapview hg19]  INO80C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095502 AK300660 BC039404 BC048989 BF475320
RefSeq transcript (Entrez)NM_001098817 NM_001308064 NM_194281
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INO80C
Cluster EST : UnigeneHs.464903 [ NCBI ]
CGAP (NCI)Hs.464903
Alternative Splicing GalleryENSG00000153391
Gene ExpressionINO80C [ NCBI-GEO ]   INO80C [ EBI - ARRAY_EXPRESS ]   INO80C [ SEEK ]   INO80C [ MEM ]
Gene Expression Viewer (FireBrowse)INO80C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125476
GTEX Portal (Tissue expression)INO80C
Human Protein AtlasENSG00000153391-INO80C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PI98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PI98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PI98
Splice isoforms : SwissVarQ6PI98
PhosPhoSitePlusQ6PI98
Domains : Interpro (EBI)INO80C/Ies6    Vps72/YL1_C   
Domain families : Pfam (Sanger)YL1_C (PF08265)   
Domain families : Pfam (NCBI)pfam08265   
Domain families : Smart (EMBL)YL1_C (SM00993)  
Conserved Domain (NCBI)INO80C
DMDM Disease mutations125476
Blocks (Seattle)INO80C
SuperfamilyQ6PI98
Human Protein Atlas [tissue]ENSG00000153391-INO80C [tissue]
Peptide AtlasQ6PI98
HPRD10719
IPIIPI00413363   IPI00167658   IPI00855954   
Protein Interaction databases
DIP (DOE-UCLA)Q6PI98
IntAct (EBI)Q6PI98
FunCoupENSG00000153391
BioGRIDINO80C
STRING (EMBL)INO80C
ZODIACINO80C
Ontologies - Pathways
QuickGOQ6PI98
Ontology : AmiGOfibrillar center  molecular_function  nucleoplasm  DNA repair  DNA recombination  chromatin remodeling  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  protein deubiquitination  Ino80 complex  MLL1 complex  
Ontology : EGO-EBIfibrillar center  molecular_function  nucleoplasm  DNA repair  DNA recombination  chromatin remodeling  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  protein deubiquitination  Ino80 complex  MLL1 complex  
NDEx NetworkINO80C
Atlas of Cancer Signalling NetworkINO80C
Wikipedia pathwaysINO80C
Orthology - Evolution
OrthoDB125476
GeneTree (enSembl)ENSG00000153391
Phylogenetic Trees/Animal Genes : TreeFamINO80C
HOVERGENQ6PI98
HOGENOMQ6PI98
Homologs : HomoloGeneINO80C
Homology/Alignments : Family Browser (UCSC)INO80C
Gene fusions - Rearrangements
Tumor Fusion PortalINO80C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINO80C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INO80C
dbVarINO80C
ClinVarINO80C
1000_GenomesINO80C 
Exome Variant ServerINO80C
ExAC (Exome Aggregation Consortium)ENSG00000153391
GNOMAD BrowserENSG00000153391
Genetic variants : HAPMAP125476
Genomic Variants (DGV)INO80C [DGVbeta]
DECIPHERINO80C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINO80C 
Mutations
ICGC Data PortalINO80C 
TCGA Data PortalINO80C 
Broad Tumor PortalINO80C
OASIS PortalINO80C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINO80C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDINO80C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch INO80C
DgiDB (Drug Gene Interaction Database)INO80C
DoCM (Curated mutations)INO80C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INO80C (select a term)
intoGenINO80C
Cancer3DINO80C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETINO80C
MedgenINO80C
Genetic Testing Registry INO80C
NextProtQ6PI98 [Medical]
TSGene125476
GENETestsINO80C
Target ValidationINO80C
Huge Navigator INO80C [HugePedia]
snp3D : Map Gene to Disease125476
BioCentury BCIQINO80C
ClinGenINO80C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125476
Chemical/Pharm GKB GenePA162392132
Clinical trialINO80C
Miscellaneous
canSAR (ICR)INO80C (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINO80C
EVEXINO80C
GoPubMedINO80C
iHOPINO80C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:41:23 CET 2017

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