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INO80D (INO80 complex subunit D)

Identity

Alias_symbol (synonym)FLJ20309
Other alias-
HGNC (Hugo) INO80D
LocusID (NCBI) 54891
Atlas_Id 52248
Location 2q33.3  [Link to chromosome band 2q33]
Location_base_pair Starts at 205993721 and ends at 206086182 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ETV6 (12p13.2) / INO80D (2q33.3)INO80D (2q33.3) / NAV1 (1q32.1)TAX1BP3 (17p13.2) / INO80D (2q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(2;12)(q33;p13) ETV6/INO80D
t(2;12)(q33;p13) ETV6/INO80D


External links

Nomenclature
HGNC (Hugo)INO80D   25997
Cards
Entrez_Gene (NCBI)INO80D  54891  INO80 complex subunit D
Aliases
GeneCards (Weizmann)INO80D
Ensembl hg19 (Hinxton)ENSG00000114933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114933 [Gene_View]  ENSG00000114933 [Sequence]  chr2:205993721-206086182 [Contig_View]  INO80D [Vega]
ICGC DataPortalENSG00000114933
TCGA cBioPortalINO80D
AceView (NCBI)INO80D
Genatlas (Paris)INO80D
WikiGenes54891
SOURCE (Princeton)INO80D
Genetics Home Reference (NIH)INO80D
Genomic and cartography
GoldenPath hg38 (UCSC)INO80D  -     chr2:205993721-206086182 -  2q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INO80D  -     2q33.3   [Description]    (hg19-Feb_2009)
EnsemblINO80D - 2q33.3 [CytoView hg19]  INO80D - 2q33.3 [CytoView hg38]
Mapping of homologs : NCBIINO80D [Mapview hg19]  INO80D [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000316 AK096585 AK225339 BC004193 BC011687
RefSeq transcript (Entrez)NM_017759
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INO80D
Cluster EST : UnigeneHs.445036 [ NCBI ]
CGAP (NCI)Hs.445036
Alternative Splicing GalleryENSG00000114933
Gene ExpressionINO80D [ NCBI-GEO ]   INO80D [ EBI - ARRAY_EXPRESS ]   INO80D [ SEEK ]   INO80D [ MEM ]
Gene Expression Viewer (FireBrowse)INO80D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54891
GTEX Portal (Tissue expression)INO80D
Human Protein AtlasENSG00000114933-INO80D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53TQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53TQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53TQ3
Splice isoforms : SwissVarQ53TQ3
PhosPhoSitePlusQ53TQ3
Domains : Interpro (EBI)Potential_DNA-bd   
Domain families : Pfam (Sanger)zf-C3Hc3H (PF13891)   
Domain families : Pfam (NCBI)pfam13891   
Conserved Domain (NCBI)INO80D
DMDM Disease mutations54891
Blocks (Seattle)INO80D
SuperfamilyQ53TQ3
Human Protein Atlas [tissue]ENSG00000114933-INO80D [tissue]
Peptide AtlasQ53TQ3
HPRD07894
IPIIPI00903124   IPI00302010   IPI00925190   
Protein Interaction databases
DIP (DOE-UCLA)Q53TQ3
IntAct (EBI)Q53TQ3
FunCoupENSG00000114933
BioGRIDINO80D
STRING (EMBL)INO80D
ZODIACINO80D
Ontologies - Pathways
QuickGOQ53TQ3
Ontology : AmiGOnucleus  nucleoplasm  DNA repair  DNA recombination  protein deubiquitination  
Ontology : EGO-EBInucleus  nucleoplasm  DNA repair  DNA recombination  protein deubiquitination  
NDEx NetworkINO80D
Atlas of Cancer Signalling NetworkINO80D
Wikipedia pathwaysINO80D
Orthology - Evolution
OrthoDB54891
GeneTree (enSembl)ENSG00000114933
Phylogenetic Trees/Animal Genes : TreeFamINO80D
HOVERGENQ53TQ3
HOGENOMQ53TQ3
Homologs : HomoloGeneINO80D
Homology/Alignments : Family Browser (UCSC)INO80D
Gene fusions - Rearrangements
Fusion : MitelmanETV6/INO80D [12p13.2/2q33.3]  [t(2;12)(q33;p13)]  
Fusion : QuiverINO80D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINO80D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INO80D
dbVarINO80D
ClinVarINO80D
1000_GenomesINO80D 
Exome Variant ServerINO80D
ExAC (Exome Aggregation Consortium)ENSG00000114933
GNOMAD BrowserENSG00000114933
Varsome BrowserINO80D
Genetic variants : HAPMAP54891
Genomic Variants (DGV)INO80D [DGVbeta]
DECIPHERINO80D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINO80D 
Mutations
ICGC Data PortalINO80D 
TCGA Data PortalINO80D 
Broad Tumor PortalINO80D
OASIS PortalINO80D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINO80D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDINO80D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch INO80D
DgiDB (Drug Gene Interaction Database)INO80D
DoCM (Curated mutations)INO80D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INO80D (select a term)
intoGenINO80D
Cancer3DINO80D(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETINO80D
MedgenINO80D
Genetic Testing Registry INO80D
NextProtQ53TQ3 [Medical]
TSGene54891
GENETestsINO80D
Target ValidationINO80D
Huge Navigator INO80D [HugePedia]
snp3D : Map Gene to Disease54891
BioCentury BCIQINO80D
ClinGenINO80D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54891
Chemical/Pharm GKB GenePA162392147
Clinical trialINO80D
Miscellaneous
canSAR (ICR)INO80D (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINO80D
EVEXINO80D
GoPubMedINO80D
iHOPINO80D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:13:34 CET 2018

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