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INO80E (INO80 complex subunit E)

Identity

Alias_namesCCDC95
coiled-coil domain containing 95
Alias_symbol (synonym)FLJ90652
Other alias
HGNC (Hugo) INO80E
LocusID (NCBI) 283899
Atlas_Id 52259
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29996209 and ends at 30005790 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INO80E   26905
Cards
Entrez_Gene (NCBI)INO80E  283899  INO80 complex subunit E
AliasesCCDC95
GeneCards (Weizmann)INO80E
Ensembl hg19 (Hinxton)ENSG00000169592 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169592 [Gene_View]  chr16:29996209-30005790 [Contig_View]  INO80E [Vega]
ICGC DataPortalENSG00000169592
TCGA cBioPortalINO80E
AceView (NCBI)INO80E
Genatlas (Paris)INO80E
WikiGenes283899
SOURCE (Princeton)INO80E
Genetics Home Reference (NIH)INO80E
Genomic and cartography
GoldenPath hg38 (UCSC)INO80E  -     chr16:29996209-30005790 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INO80E  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblINO80E - 16p11.2 [CytoView hg19]  INO80E - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIINO80E [Mapview hg19]  INO80E [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI686175 AK074033 AK074137 AK075133 AK097889
RefSeq transcript (Entrez)NM_001304562 NM_001304563 NM_173618
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INO80E
Cluster EST : UnigeneHs.434864 [ NCBI ]
CGAP (NCI)Hs.434864
Alternative Splicing GalleryENSG00000169592
Gene ExpressionINO80E [ NCBI-GEO ]   INO80E [ EBI - ARRAY_EXPRESS ]   INO80E [ SEEK ]   INO80E [ MEM ]
Gene Expression Viewer (FireBrowse)INO80E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283899
GTEX Portal (Tissue expression)INO80E
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBZ0
Splice isoforms : SwissVarQ8NBZ0
PhosPhoSitePlusQ8NBZ0
Domains : Interpro (EBI)INO80E   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)INO80E
DMDM Disease mutations283899
Blocks (Seattle)INO80E
SuperfamilyQ8NBZ0
Human Protein AtlasENSG00000169592
Peptide AtlasQ8NBZ0
HPRD08816
IPIIPI00168357   IPI00640889   IPI01012109   IPI00815939   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBZ0
IntAct (EBI)Q8NBZ0
FunCoupENSG00000169592
BioGRIDINO80E
STRING (EMBL)INO80E
ZODIACINO80E
Ontologies - Pathways
QuickGOQ8NBZ0
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  nucleolus  DNA replication  DNA repair  DNA recombination  transcription, DNA-templated  regulation of transcription, DNA-templated  protein deubiquitination  Ino80 complex  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  nucleolus  DNA replication  DNA repair  DNA recombination  transcription, DNA-templated  regulation of transcription, DNA-templated  protein deubiquitination  Ino80 complex  
NDEx NetworkINO80E
Atlas of Cancer Signalling NetworkINO80E
Wikipedia pathwaysINO80E
Orthology - Evolution
OrthoDB283899
GeneTree (enSembl)ENSG00000169592
Phylogenetic Trees/Animal Genes : TreeFamINO80E
HOVERGENQ8NBZ0
HOGENOMQ8NBZ0
Homologs : HomoloGeneINO80E
Homology/Alignments : Family Browser (UCSC)INO80E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINO80E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INO80E
dbVarINO80E
ClinVarINO80E
1000_GenomesINO80E 
Exome Variant ServerINO80E
ExAC (Exome Aggregation Consortium)INO80E (select the gene name)
Genetic variants : HAPMAP283899
Genomic Variants (DGV)INO80E [DGVbeta]
DECIPHERINO80E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINO80E 
Mutations
ICGC Data PortalINO80E 
TCGA Data PortalINO80E 
Broad Tumor PortalINO80E
OASIS PortalINO80E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINO80E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDINO80E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch INO80E
DgiDB (Drug Gene Interaction Database)INO80E
DoCM (Curated mutations)INO80E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INO80E (select a term)
intoGenINO80E
Cancer3DINO80E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenINO80E
Genetic Testing Registry INO80E
NextProtQ8NBZ0 [Medical]
TSGene283899
GENETestsINO80E
Target ValidationINO80E
Huge Navigator INO80E [HugePedia]
snp3D : Map Gene to Disease283899
BioCentury BCIQINO80E
ClinGenINO80E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283899
Chemical/Pharm GKB GenePA162392174
Clinical trialINO80E
Miscellaneous
canSAR (ICR)INO80E (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINO80E
EVEXINO80E
GoPubMedINO80E
iHOPINO80E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:38:35 CEST 2017

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