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INTS10 (integrator complex subunit 10)

Identity

Other aliasC8orf35
INT10
HGNC (Hugo) INTS10
LocusID (NCBI) 55174
Atlas_Id 56972
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 19817407 and ends at 19852075 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FOSL2 (2p23.2) / INTS10 (8p21.3)INTS10 (8p21.3) / INTS10 (8p21.3)PDE4D (5q11.2) / INTS10 (8p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INTS10   25548
Cards
Entrez_Gene (NCBI)INTS10  55174  integrator complex subunit 10
AliasesC8orf35; INT10
GeneCards (Weizmann)INTS10
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:19817407-19852075 [Contig_View]  INTS10 [Vega]
TCGA cBioPortalINTS10
AceView (NCBI)INTS10
Genatlas (Paris)INTS10
WikiGenes55174
SOURCE (Princeton)INTS10
Genetics Home Reference (NIH)INTS10
Genomic and cartography
GoldenPath hg38 (UCSC)INTS10  -     chr8:19817407-19852075 +  8p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INTS10  -     8p21.3   [Description]    (hg19-Feb_2009)
EnsemblINTS10 - 8p21.3 [CytoView hg19]  INTS10 - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBIINTS10 [Mapview hg19]  INTS10 [Mapview hg38]
OMIM611353   
Gene and transcription
Genbank (Entrez)AI479676 AK001431 AK092931 AL442078 BC001915
RefSeq transcript (Entrez)NM_001353505 NM_001353506 NM_001353507 NM_001353508 NM_001353509 NM_001353510 NM_001353511 NM_001353512 NM_001353513 NM_001353514 NM_001353515 NM_001353516 NM_001353517 NM_001353518 NM_001353519 NM_001353520 NM_001353521 NM_001353522 NM_018142
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INTS10
Cluster EST : UnigeneHs.512627 [ NCBI ]
CGAP (NCI)Hs.512627
Gene ExpressionINTS10 [ NCBI-GEO ]   INTS10 [ EBI - ARRAY_EXPRESS ]   INTS10 [ SEEK ]   INTS10 [ MEM ]
Gene Expression Viewer (FireBrowse)INTS10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55174
GTEX Portal (Tissue expression)INTS10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVR2
Splice isoforms : SwissVarQ9NVR2
PhosPhoSitePlusQ9NVR2
Domains : Interpro (EBI)Int_cplx_su10   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)INTS10
DMDM Disease mutations55174
Blocks (Seattle)INTS10
SuperfamilyQ9NVR2
Peptide AtlasQ9NVR2
IPIIPI00550272   IPI00981880   IPI00792996   IPI00980822   IPI00976479   IPI00984833   IPI00975975   IPI00982444   IPI00981461   IPI00983033   IPI00984266   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVR2
IntAct (EBI)Q9NVR2
BioGRIDINTS10
STRING (EMBL)INTS10
ZODIACINTS10
Ontologies - Pathways
QuickGOQ9NVR2
Ontology : AmiGOprotein binding  protein binding  nucleus  nucleoplasm  snRNA processing  integrator complex  snRNA transcription from RNA polymerase II promoter  
Ontology : EGO-EBIprotein binding  protein binding  nucleus  nucleoplasm  snRNA processing  integrator complex  snRNA transcription from RNA polymerase II promoter  
NDEx NetworkINTS10
Atlas of Cancer Signalling NetworkINTS10
Wikipedia pathwaysINTS10
Orthology - Evolution
OrthoDB55174
Phylogenetic Trees/Animal Genes : TreeFamINTS10
HOVERGENQ9NVR2
HOGENOMQ9NVR2
Homologs : HomoloGeneINTS10
Homology/Alignments : Family Browser (UCSC)INTS10
Gene fusions - Rearrangements
Tumor Fusion PortalINTS10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINTS10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INTS10
dbVarINTS10
ClinVarINTS10
1000_GenomesINTS10 
Exome Variant ServerINTS10
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP55174
Genomic Variants (DGV)INTS10 [DGVbeta]
DECIPHERINTS10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINTS10 
Mutations
ICGC Data PortalINTS10 
TCGA Data PortalINTS10 
Broad Tumor PortalINTS10
OASIS PortalINTS10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINTS10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDINTS10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch INTS10
DgiDB (Drug Gene Interaction Database)INTS10
DoCM (Curated mutations)INTS10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INTS10 (select a term)
intoGenINTS10
Cancer3DINTS10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611353   
Orphanet
DisGeNETINTS10
MedgenINTS10
Genetic Testing Registry INTS10
NextProtQ9NVR2 [Medical]
TSGene55174
GENETestsINTS10
Target ValidationINTS10
Huge Navigator INTS10 [HugePedia]
snp3D : Map Gene to Disease55174
BioCentury BCIQINTS10
ClinGenINTS10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55174
Chemical/Pharm GKB GenePA142672354
Clinical trialINTS10
Miscellaneous
canSAR (ICR)INTS10 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINTS10
EVEXINTS10
GoPubMedINTS10
iHOPINTS10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:17:58 CET 2017

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