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INTS12 (integrator complex subunit 12)

Identity

Alias_namesPHF22
PHD finger protein 22
Alias_symbol (synonym)SBBI22
INT12
Other alias
HGNC (Hugo) INTS12
LocusID (NCBI) 57117
Atlas_Id 41181
Location 4q24  [Link to chromosome band 4q24]
Location_base_pair Starts at 105682628 and ends at 105708724 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
INTS12 (4q24) / CXXC4 (4q24)INTS12 4q24 / CXXC4 4q24

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INTS12   25067
Cards
Entrez_Gene (NCBI)INTS12  57117  integrator complex subunit 12
AliasesINT12; PHF22; SBBI22
GeneCards (Weizmann)INTS12
Ensembl hg19 (Hinxton)ENSG00000138785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138785 [Gene_View]  chr4:105682628-105708724 [Contig_View]  INTS12 [Vega]
ICGC DataPortalENSG00000138785
TCGA cBioPortalINTS12
AceView (NCBI)INTS12
Genatlas (Paris)INTS12
WikiGenes57117
SOURCE (Princeton)INTS12
Genetics Home Reference (NIH)INTS12
Genomic and cartography
GoldenPath hg38 (UCSC)INTS12  -     chr4:105682628-105708724 -  4q24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INTS12  -     4q24   [Description]    (hg19-Feb_2009)
EnsemblINTS12 - 4q24 [CytoView hg19]  INTS12 - 4q24 [CytoView hg38]
Mapping of homologs : NCBIINTS12 [Mapview hg19]  INTS12 [Mapview hg38]
OMIM611355   
Gene and transcription
Genbank (Entrez)AF242524 AK314939 BC014442 BK005729 HQ447281
RefSeq transcript (Entrez)NM_001142471 NM_020395
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INTS12
Cluster EST : UnigeneHs.480454 [ NCBI ]
CGAP (NCI)Hs.480454
Alternative Splicing GalleryENSG00000138785
Gene ExpressionINTS12 [ NCBI-GEO ]   INTS12 [ EBI - ARRAY_EXPRESS ]   INTS12 [ SEEK ]   INTS12 [ MEM ]
Gene Expression Viewer (FireBrowse)INTS12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57117
GTEX Portal (Tissue expression)INTS12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CB8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CB8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CB8
Splice isoforms : SwissVarQ96CB8
PhosPhoSitePlusQ96CB8
Domaine pattern : Prosite (Expaxy)ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PHD (PF00628)   
Domain families : Pfam (NCBI)pfam00628   
Domain families : Smart (EMBL)PHD (SM00249)  
Conserved Domain (NCBI)INTS12
DMDM Disease mutations57117
Blocks (Seattle)INTS12
SuperfamilyQ96CB8
Human Protein AtlasENSG00000138785
Peptide AtlasQ96CB8
HPRD11271
IPIIPI00060379   IPI00879562   IPI00878539   IPI00967631   IPI00967883   IPI00964514   
Protein Interaction databases
DIP (DOE-UCLA)Q96CB8
IntAct (EBI)Q96CB8
FunCoupENSG00000138785
BioGRIDINTS12
STRING (EMBL)INTS12
ZODIACINTS12
Ontologies - Pathways
QuickGOQ96CB8
Ontology : AmiGOprotein binding  nucleoplasm  zinc ion binding  snRNA processing  integrator complex  snRNA transcription from RNA polymerase II promoter  
Ontology : EGO-EBIprotein binding  nucleoplasm  zinc ion binding  snRNA processing  integrator complex  snRNA transcription from RNA polymerase II promoter  
NDEx NetworkINTS12
Atlas of Cancer Signalling NetworkINTS12
Wikipedia pathwaysINTS12
Orthology - Evolution
OrthoDB57117
GeneTree (enSembl)ENSG00000138785
Phylogenetic Trees/Animal Genes : TreeFamINTS12
HOVERGENQ96CB8
HOGENOMQ96CB8
Homologs : HomoloGeneINTS12
Homology/Alignments : Family Browser (UCSC)INTS12
Gene fusions - Rearrangements
Fusion: TCGAINTS12 4q24 CXXC4 4q24 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINTS12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INTS12
dbVarINTS12
ClinVarINTS12
1000_GenomesINTS12 
Exome Variant ServerINTS12
ExAC (Exome Aggregation Consortium)INTS12 (select the gene name)
Genetic variants : HAPMAP57117
Genomic Variants (DGV)INTS12 [DGVbeta]
DECIPHERINTS12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINTS12 
Mutations
ICGC Data PortalINTS12 
TCGA Data PortalINTS12 
Broad Tumor PortalINTS12
OASIS PortalINTS12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICINTS12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDINTS12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch INTS12
DgiDB (Drug Gene Interaction Database)INTS12
DoCM (Curated mutations)INTS12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INTS12 (select a term)
intoGenINTS12
Cancer3DINTS12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611355   
Orphanet
MedgenINTS12
Genetic Testing Registry INTS12
NextProtQ96CB8 [Medical]
TSGene57117
GENETestsINTS12
Target ValidationINTS12
Huge Navigator INTS12 [HugePedia]
snp3D : Map Gene to Disease57117
BioCentury BCIQINTS12
ClinGenINTS12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57117
Chemical/Pharm GKB GenePA142671177
Clinical trialINTS12
Miscellaneous
canSAR (ICR)INTS12 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINTS12
EVEXINTS12
GoPubMedINTS12
iHOPINTS12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:13:29 CEST 2017

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