Atlas of Genetics and Cytogenetics in Oncology and Haematology


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INTS13 (integrator complex subunit 13)

Identity

Alias_namesC12orf11
ASUN
chromosome 12 open reading frame 11
asunder, spermatogenesis regulator homolog (Drosphila)
Alias_symbol (synonym)FLJ10637
NET48
Mat89Bb
SPATA30
Other aliasGCT1
HGNC (Hugo) INTS13
LocusID (NCBI) 55726
Atlas_Id 79970
Location 12p11.23  [Link to chromosome band 12p11]
Location_base_pair Starts at 26905179 and ends at 26938321 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)INTS13   20174
Cards
Entrez_Gene (NCBI)INTS13  55726  integrator complex subunit 13
AliasesASUN; C12orf11; GCT1; Mat89Bb; 
NET48; SPATA30
GeneCards (Weizmann)INTS13
Ensembl hg19 (Hinxton)ENSG00000064102 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000064102 [Gene_View]  chr12:26905179-26938321 [Contig_View]  INTS13 [Vega]
ICGC DataPortalENSG00000064102
TCGA cBioPortalINTS13
AceView (NCBI)INTS13
Genatlas (Paris)INTS13
WikiGenes55726
SOURCE (Princeton)INTS13
Genetics Home Reference (NIH)INTS13
Genomic and cartography
GoldenPath hg38 (UCSC)INTS13  -     chr12:26905179-26938321 -  12p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)INTS13  -     12p11.23   [Description]    (hg19-Feb_2009)
EnsemblINTS13 - 12p11.23 [CytoView hg19]  INTS13 - 12p11.23 [CytoView hg38]
Mapping of homologs : NCBIINTS13 [Mapview hg19]  INTS13 [Mapview hg38]
OMIM615079   
Gene and transcription
Genbank (Entrez)AF274950 AK001222 AK001492 AK001499 AK225336
RefSeq transcript (Entrez)NM_018164
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)INTS13
Cluster EST : UnigeneHs.505077 [ NCBI ]
CGAP (NCI)Hs.505077
Alternative Splicing GalleryENSG00000064102
Gene ExpressionINTS13 [ NCBI-GEO ]   INTS13 [ EBI - ARRAY_EXPRESS ]   INTS13 [ SEEK ]   INTS13 [ MEM ]
Gene Expression Viewer (FireBrowse)INTS13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55726
GTEX Portal (Tissue expression)INTS13
Human Protein AtlasENSG00000064102-INTS13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVM9
Splice isoforms : SwissVarQ9NVM9
PhosPhoSitePlusQ9NVM9
Domains : Interpro (EBI)Cell_cycle_regulator_Mat89Bb   
Domain families : Pfam (Sanger)DUF2151 (PF10221)   
Domain families : Pfam (NCBI)pfam10221   
Conserved Domain (NCBI)INTS13
DMDM Disease mutations55726
Blocks (Seattle)INTS13
SuperfamilyQ9NVM9
Human Protein Atlas [tissue]ENSG00000064102-INTS13 [tissue]
Peptide AtlasQ9NVM9
IPIIPI00550986   IPI01015796   IPI00382466   IPI00182406   IPI01020739   IPI01021521   IPI01010799   IPI01009345   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVM9
IntAct (EBI)Q9NVM9
FunCoupENSG00000064102
BioGRIDINTS13
STRING (EMBL)INTS13
ZODIACINTS13
Ontologies - Pathways
QuickGOQ9NVM9
Ontology : AmiGOprotein binding  nucleus  nucleus  nucleoplasm  cytoplasm  cytoplasm  mitotic spindle organization  regulation of mitotic cell cycle  flagellated sperm motility  snRNA transcription from RNA polymerase II promoter  cell division  centrosome localization  regulation of fertilization  protein localization to nuclear envelope  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  nucleoplasm  cytoplasm  cytoplasm  mitotic spindle organization  regulation of mitotic cell cycle  flagellated sperm motility  snRNA transcription from RNA polymerase II promoter  cell division  centrosome localization  regulation of fertilization  protein localization to nuclear envelope  
NDEx NetworkINTS13
Atlas of Cancer Signalling NetworkINTS13
Wikipedia pathwaysINTS13
Orthology - Evolution
OrthoDB55726
GeneTree (enSembl)ENSG00000064102
Phylogenetic Trees/Animal Genes : TreeFamINTS13
HOVERGENQ9NVM9
HOGENOMQ9NVM9
Homologs : HomoloGeneINTS13
Homology/Alignments : Family Browser (UCSC)INTS13
Gene fusions - Rearrangements
Tumor Fusion PortalINTS13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerINTS13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)INTS13
dbVarINTS13
ClinVarINTS13
1000_GenomesINTS13 
Exome Variant ServerINTS13
ExAC (Exome Aggregation Consortium)ENSG00000064102
GNOMAD BrowserENSG00000064102
Genetic variants : HAPMAP55726
Genomic Variants (DGV)INTS13 [DGVbeta]
DECIPHERINTS13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisINTS13 
Mutations
ICGC Data PortalINTS13 
TCGA Data PortalINTS13 
Broad Tumor PortalINTS13
OASIS PortalINTS13 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDINTS13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch INTS13
DgiDB (Drug Gene Interaction Database)INTS13
DoCM (Curated mutations)INTS13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)INTS13 (select a term)
intoGenINTS13
Cancer3DINTS13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615079   
Orphanet
DisGeNETINTS13
MedgenINTS13
Genetic Testing Registry INTS13
NextProtQ9NVM9 [Medical]
TSGene55726
GENETestsINTS13
Target ValidationINTS13
Huge Navigator INTS13 [HugePedia]
snp3D : Map Gene to Disease55726
BioCentury BCIQINTS13
ClinGenINTS13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55726
Chemical/Pharm GKB GenePA134892469
Clinical trialINTS13
Miscellaneous
canSAR (ICR)INTS13 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineINTS13
EVEXINTS13
GoPubMedINTS13
iHOPINTS13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:26:17 CET 2017

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